PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca38601.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 198aa MW: 22390.6 Da PI: 5.4473

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca38601.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.8	4.6e-14	102	189	4	99
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ps+++ +l lp +f++e + ++ + +tl de+g+++ + rkk+ l++GWk+F+ ++L +gD vvF+l++ s +v ++r+ Dca38601.1 102 PMLPSHTSGGFWLGLPTDFCRESM--PRDDGVVTLVDEEGEEFPTVYLARKKG----LSGGWKGFAVFHELVDGDAVVFQLIKPSVL--KVYIIRA 189 68899999**********9996..334558***********667776....9*********************985555..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.41E-21	95	191	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-17	96	191	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.54E-21	97	188	No hit	No description
PROSITE profile	PS50863	11.476	99	190	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-17	99	190	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-12	103	189	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MFMVVVKRGS RCIRWLAAAW GVKVMVAGGA WAWVGSQRER WSFELAGQQR EREGVRWTYG 60 VARRDLSDRV YATEEERVFS INEAEKLEEK LKEEGFPTLI RPMLPSHTSG GFWLGLPTDF 120 CRESMPRDDG VVTLVDEEGE EFPTVYLARK KGLSGGWKGF AVFHELVDGD AVVFQLIKPS 180 VLKVYIIRAN GLESGEDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667517.1	1e-69	PREDICTED: B3 domain-containing protein At5g42700
Swissprot	Q69V36	6e-54	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A0J8B623	3e-68	A0A0J8B623_BETVU; Uncharacterized protein
STRING	XP_010667517.1	5e-69	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-43	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]