PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca38602.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 184aa MW: 20774.8 Da PI: 9.3433

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca38602.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.1	1.5e-13	86	176	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k ++ps+++ +l lp +f+++ + +++++++tl de+g+++ + ++++ l++GW++F +++L +gD ++ +l++ s +v ++r+ Dca38602.1 86 FIKPMLPSHTTGGFWLGLPTDFCRARM--PHKDTDITLVDEDGEEFPTVY--LAHKKG--LSGGWRGFSLSHELVDGDAIICQLIKPSVL--KVYIIRA 176 89*******************9887..457889***********..555555..9********************9985555..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.73E-22	81	178	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.0E-17	82	177	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.25E-21	84	175	No hit	No description
PROSITE profile	PS50863	10.743	86	177	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-17	86	177	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.0E-11	86	176	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MKKVGKARIV EKNTVAVRRS TRVSMNPAPV YTEVALPRIF SGRKSYGVRR RDLSDRVYAT 60 EEERAYSIDE AEKLEKKLKE EGFPTFIKPM LPSHTTGGFW LGLPTDFCRA RMPHKDTDIT 120 LVDEDGEEFP TVYLAHKKGL SGGWRGFSLS HELVDGDAII CQLIKPSVLK VYIIRASGFH 180 SSED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021742976.1	1e-86	B3 domain-containing protein At5g42700-like
Swissprot	Q69V36	7e-59	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A0J8B623	3e-83	A0A0J8B623_BETVU; Uncharacterized protein
STRING	XP_010667517.1	5e-84	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-47	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]