PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38761.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 460aa    MW: 50984.3 Da    PI: 6.2717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38761.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14270316455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Dca38761.1 270 NHVLAERRRREKLNEKFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 316
                 7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.536266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-18268330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-15270320No hitNo description
PfamPF000104.4E-12270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-19270332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-17272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MPPKPALSEH STSNPTSSSR SHFHSSLGTT APRHPPPPTN RVEDDDDYED EDCVDEVGSD  60
SEAQTNVTHA QPIELMQLEM PDDIRLGSPE DASNNLDLDF PPMTQRVAPS SHHQHREGDS  120
VKATESTRMW PPVQQPSISS NSFPPPVTLG APVLDELSHE DLLYSQTVSI ILQVQTSPPT  180
SYLAKSRNTA FSRWSTNSTN NQTHRPMFGR SQSLLKYILF TVPCLHAKHR DESNNAICPN  240
SDPHALDYTA MTKYRTTKGG GVPQEELSAN HVLAERRRRE KLNEKFIILR SLVPFVTKMD  300
KASILGDTIE YLKQLRKKIQ DLEARPKQID QEPATSGETD KRSAVPTAGR GVEKRKIRVV  360
EGGGHTVPKA MESGDMLQVS IIENDALVEL QCAHQEGLLL DVMLKLRDMS MEVTAVQCSV  420
NDGFIVAELR GKVKENANGK KASIVEVKKA VYQIVPHTEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14270329867Transcription factor MYC2
5gnj_B1e-14270329867Transcription factor MYC2
5gnj_E1e-14270329867Transcription factor MYC2
5gnj_F1e-14270329867Transcription factor MYC2
5gnj_G1e-14270329867Transcription factor MYC2
5gnj_I1e-14270329867Transcription factor MYC2
5gnj_M1e-14270329867Transcription factor MYC2
5gnj_N1e-14270329867Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279ERRRRE
2275280RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070223.11e-131PREDICTED: basic helix-loop-helix protein A
SwissprotE3SXU41e-123BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0S0AHA60.0A0A0S0AHA6_DIACA; Basic helix loop helix AN1-like transcription factor (Fragment)
STRINGXP_010070223.11e-131(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-50bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]