PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38856.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 813aa    MW: 89240.1 Da    PI: 6.2474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38856.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-181775357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++p+  +r++L + +    +++ +q+kvWFqNrR +ek+
  Dca38856.1 17 KYVRYTPEQVEALERLYHECPKPTSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 75
                5679*****************************************************97 PP
2START145.74.2e-461613372173
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +++l
  Dca38856.1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRQSWFRDCRAVDVLNVLPTAngGTIELLYMQL 258
                 7899******************************************************.8999999998****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                 +a+++l+p Rdf+ +Ry+   ++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s + +v+h+dl+
  Dca38856.1 259 YAPTTLAPaRDFWLLRYTSAIEDGSLVVCERSLNNTQNGPSmpaVQNFVRAEMLPSGYLIRPCEGGGSIIRIVDHMDLE 337
                 ****************************************999899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-18775IPR009057Homeodomain-like
PROSITE profilePS5007115.4991276IPR001356Homeobox domain
SMARTSM003895.6E-151480IPR001356Homeobox domain
SuperFamilySSF466891.37E-161680IPR009057Homeodomain-like
CDDcd000867.78E-161777No hitNo description
PfamPF000464.8E-161875IPR001356Homeobox domain
CDDcd146861.83E-669108No hitNo description
PROSITE profilePS5084824.358151357IPR002913START domain
CDDcd088751.46E-67155337No hitNo description
SuperFamilySSF559612.47E-33160343No hitNo description
SMARTSM002347.1E-31160370IPR002913START domain
Gene3DG3DSA:3.30.530.206.1E-21160337IPR023393START-like domain
PfamPF018521.1E-43161338IPR002913START domain
PfamPF086703.4E-50670812IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MMSMSCKDGK GGYDNGKYVR YTPEQVEALE RLYHECPKPT SLRRQQLIRD CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLS AMNKLLMEEN DRLQKQVSQL VYENGYFRQQ  120
TQKAGIASKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRQSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSAIE DGSLVVCERS LNNTQNGPSM  300
PAVQNFVRAE MLPSGYLIRP CEGGGSIIRI VDHMDLEALR QLRQIAQEMS QPTVSNWGRR  360
PAALRALSQR LSRGFNEALN GFTEEGWSML GNDGVDDVTV LVNSSPDKLM ALNLTYANGF  420
PAVSNTILCA KASMLLQNVP PAVLLRFLRE HRSEWADNNI DAYLAAAAKI SPCSLPGIRT  480
GGFSNQVILP LAHTIEHEEL LEVIKLEGLV SCPEDAMMPR DMFLLQMCSG MDENAVGACS  540
ELIFAPIDAT FADDAPLLPS GFRIIPLDSA KEASSPNRTL DLASALEVGG PSGNKFGTDH  600
SASGGSMRSV VTIAFQFAFE SHLQDNMASM ARQYVRSIIS SVQRVALALS PQTGSQGGLK  660
LSLGNPEAHT LARWICQSYR CFLGVDLLKS TGEGSDAVLK SLWQHSDAIM CCSLKTLPVF  720
TFANQAGLDM LETTLVALQD IPLDKILDDH GRQTLSSEFP QILQQGFAGL QGGICLSSMG  780
RPVSYERAVA WKVLNDEENN HCICFMFMNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691423.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0K9RV390.0A0A0K9RV39_SPIOL; Uncharacterized protein
STRINGXP_010691422.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]