PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca38957.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 487aa MW: 52931.3 Da PI: 9.5538

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca38957.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.9e-06	254	276	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ L++H + H Dca38957.1 254 TCHKCGEQFNKWDALESHHLSnH 276 8*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.746	253	281	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	255	276	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.73E-20	278	486	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.5E-8	289	463	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MESRSSNNNN GGSSKGGKEN NKPNVWFSLK KSLQCKSGPS DVHEPRSSSR KNNHNINNHS 60 SNNIYNSSNN SSSNYSINSI LTRKVGRSGC SRSIANLKDV IHGSKRHIEK PPSCSPRSIG 120 SSEFLNPITH EVILSNSRCE LKISGFGANF HDSLGSNNNN NNNNNNNSSN NNVGEGGGVG 180 STYVGTLRPG TPGPGGHPTM HYFNNPSFVR GAAASRKSFS MERDGGGGGG GGGGMGLRKR 240 FSLEIEANGC SNLTCHKCGE QFNKWDALES HHLSNHAVTE LVEGDSSRKI VEIICRTSWL 300 KSENHCGRIE RVLKVHNTQK TIARFEEYRE MVKNKASKLA KKHPRCLADG NELLRFYGTT 360 LGCSLGVDGS SSLCVSEKCC VCRIIRNGFY TKKEIKSGVG VFTTSTSERA FEGIDFPEND 420 TSMKKALIVC RVIAGRVHRP LENVQELAGQ TGFDSLAGKV GLYSNIEELF LLNPRALLPC 480 FVVICKP

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MESRSSNNNN GGSSKGGKEN NKPNVWFSLK KSLQCKSGPS DVHEPRSSSR KNNHNINNHS  60
SNNIYNSSNN SSSNYSINSI LTRKVGRSGC SRSIANLKDV IHGSKRHIEK PPSCSPRSIG  120
SSEFLNPITH EVILSNSRCE LKISGFGANF HDSLGSNNNN NNNNNNNSSN NNVGEGGGVG  180
STYVGTLRPG TPGPGGHPTM HYFNNPSFVR GAAASRKSFS MERDGGGGGG GGGGMGLRKR  240
FSLEIEANGC SNLTCHKCGE QFNKWDALES HHLSNHAVTE LVEGDSSRKI VEIICRTSWL  300
KSENHCGRIE RVLKVHNTQK TIARFEEYRE MVKNKASKLA KKHPRCLADG NELLRFYGTT  360
LGCSLGVDGS SSLCVSEKCC VCRIIRNGFY TKKEIKSGVG VFTTSTSERA FEGIDFPEND  420
TSMKKALIVC RVIAGRVHRP LENVQELAGQ TGFDSLAGKV GLYSNIEELF LLNPRALLPC  480
FVVICKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694273.1	0.0	PREDICTED: uncharacterized protein LOC104907097
TrEMBL	U5GX07	0.0	U5GX07_POPTR; Uncharacterized protein
STRING	XP_010694273.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-127	C2H2 family protein