PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca3904.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

WRKY

Protein Properties

Length: 546aa MW: 60715.1 Da PI: 6.6334

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca3904.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.7e-30	232	289	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK vk se+prsYY+C++++C+++kkve+sa +++v+ei+Y+g+Hnh+k Dca3904.1 232 EDGYCWRKYGQKLVKASENPRSYYKCSHPNCTMTKKVETSA-EGEVTEIVYKGNHNHPK 289 8**************************************.*************85 PP
2	WRKY	105.1	3.7e-33	400	458	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYY+Cts gCpv+k++er+++d+++v++tYeg+Hnh+ Dca3904.1 400 LDDGFRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHIERASHDTRAVITTYEGKHNHD 458 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-25	220	290	IPR003657	WRKY domain
PROSITE profile	PS50811	20.828	226	290	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-22	228	290	IPR003657	WRKY domain
SMART	SM00774	1.8E-32	231	289	IPR003657	WRKY domain
Pfam	PF03106	1.3E-22	232	288	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.1E-36	385	460	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-29	392	460	IPR003657	WRKY domain
PROSITE profile	PS50811	38.113	395	460	IPR003657	WRKY domain
SMART	SM00774	9.5E-39	400	459	IPR003657	WRKY domain
Pfam	PF03106	3.5E-25	401	458	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MSSSSIASFE PNNSFTKSTF PFTNLMTSPF SDFFNNNNNN NNNNHDDEDN NSSNNNNNSK 60 IIDAQRNNKN NNDNNDLGNA WGGFDQLVEA PKFKSWAPAS LSVSEPNSFA TASTSNLFSP 120 SIFLDSPLLN NFPSPTVGAF GGAKFNWGGS SQTQQIPKED AKQEHHNNFT FDAANDTKVG 180 WNPIKHKKED DTTVNNRIIP YETNTTQSEP RLQQGYNSQP VVHMNRSQKR AEDGYCWRKY 240 GQKLVKASEN PRSYYKCSHP NCTMTKKVET SAEGEVTEIV YKGNHNHPKP QPGRRSTAAQ 300 TRLNNNHRFE VSETSDATLA VQAPAEYSAF TPETSSVSLN DEDDFDQSSA VSRSQIGDEN 360 EPEAKRWKSE NEAEAASAYG GRTVKEPRVI VQTTSEIDIL DDGFRWRKYG QKVVKGNPNP 420 RSYYKCTSVG CPVRKHIERA SHDTRAVITT YEGKHNHDVP AARGSSGYSN APLPVRPVST 480 IPSQSNLANN PKPFTNDKNT LKPLTDTHFA LQMLQNPGNF GFSGFGNLSE TKDEPMDNTF 540 PESFFG

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MSSSSIASFE PNNSFTKSTF PFTNLMTSPF SDFFNNNNNN NNNNHDDEDN NSSNNNNNSK  60
IIDAQRNNKN NNDNNDLGNA WGGFDQLVEA PKFKSWAPAS LSVSEPNSFA TASTSNLFSP  120
SIFLDSPLLN NFPSPTVGAF GGAKFNWGGS SQTQQIPKED AKQEHHNNFT FDAANDTKVG  180
WNPIKHKKED DTTVNNRIIP YETNTTQSEP RLQQGYNSQP VVHMNRSQKR AEDGYCWRKY  240
GQKLVKASEN PRSYYKCSHP NCTMTKKVET SAEGEVTEIV YKGNHNHPKP QPGRRSTAAQ  300
TRLNNNHRFE VSETSDATLA VQAPAEYSAF TPETSSVSLN DEDDFDQSSA VSRSQIGDEN  360
EPEAKRWKSE NEAEAASAYG GRTVKEPRVI VQTTSEIDIL DDGFRWRKYG QKVVKGNPNP  420
RSYYKCTSVG CPVRKHIERA SHDTRAVITT YEGKHNHDVP AARGSSGYSN APLPVRPVST  480
IPSQSNLANN PKPFTNDKNT LKPLTDTHFA LQMLQNPGNF GFSGFGNLSE TKDEPMDNTF  540
PESFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-34	232	461	8	78	Probable WRKY transcription factor 4
2lex_A	5e-34	232	461	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000250\|UniProtKB:Q6QHD1}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000269\|PubMed:16919842, ECO:0000269\|PubMed:25110688}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106270.1	0.0	PREDICTED: probable WRKY transcription factor 33
Swissprot	Q6B6R4	1e-100	WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBL	A0A0K9Q8X6	0.0	A0A0K9Q8X6_SPIOL; Uncharacterized protein
STRING	XP_010683807.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-100	WRKY DNA-binding protein 33

Publications ? help Back to Top
Basu S,Roychoudhury A Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688]