PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39460.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 200aa    MW: 22960.7 Da    PI: 9.9742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39460.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-113771797
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                ++p +f+++++g+   +  ++l+d++gr W  +l    +s++  +t+GW + +++ +Lk g+fv ++++++s+f  +v++f
  Dca39460.1  3 RIPPSFVKNFDGQ--IPHFVSLTDSTGRIWPAEL--GIRSQELHITEGWHQCARDLELKCGEFVELRYVQNSTF--LVTAF 77
                69*****988777..5557***************..*********************************99998..77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.589180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-14382IPR015300DNA-binding pseudobarrel domain
PfamPF023626.3E-9376IPR003340B3 DNA binding domain
CDDcd100175.59E-10377No hitNo description
SuperFamilySSF1019361.06E-15382IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MKRIPPSFVK NFDGQIPHFV SLTDSTGRIW PAELGIRSQE LHITEGWHQC ARDLELKCGE  60
FVELRYVQNS TFLVTAFGID GCQKKESGER IQKNRGDGFV GIRFQKIFKA KFKNFVSIPK  120
KVLLKCNFSL DQRVTVRSNE GHFAISQLRV TRDRFVLGYT GLMKLWERMG VLKGDKLEFE  180
VICENGNKIK EIVVSNLSQC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-11B3 family protein