PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca39468.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 679aa MW: 78227.4 Da PI: 9.1442

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca39468.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.1	5.6e-08	57	150	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f +YA + GF+v +++++ + k + ++r+ C gk+e++ + + ++r+ +++ tgCka ++ + d+ +++++++leHnHel Dca39468.1 57 FIISYALKKGFEVFTRSNSLKpKFRNAGVSRK--C--GGKKESRYHMmerfrlackKGGRKRSGKSNVTGCKAFFEGAIQ-DDGFVIKTVHLEHNHELD 150 5568*******9988877633333233333..3..33333333334467898877788889999******9999.999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-6	57	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-23	272	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.469	472	508	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0038	483	510	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MVESVENSID EVVSTEESPN PIDQAVNAVE GENGTNDDIA DPTVGMVFPN CDSFAEFIIS 60 YALKKGFEVF TRSNSLKPKF RNAGVSRKCG GKKESRYHMM ERFRLACKKG GRKRSGKSNV 120 TGCKAFFEGA IQDDGFVIKT VHLEHNHELD PGNSRFKVSA RTITDYFKER IVLNDRAGIP 180 ITNNFNAMVI EAGGHENLPF NHRDLRNLVN LERRLQRING DAAALEEYFV KMKIENPNFF 240 YAIKKDNNEG RLHNVFWADA RYRAMFKVFG DVVTYDTTFL CNRYRLPFSP FIGVNHHGNS 300 ICFTAALITN EDTEMFIWVF ERWLECMGKA PPVILSDQDK AIGKAIETVF PGMSSTPRSE 360 QSNRFFKVRV SLETGLRNFM TQFDLAQQSK VEDEKTQNFI CKDRPLPYDK SVLVEEVFSK 420 LYTNEKFKEV KEQVYAGIRM FISLVMRMRS YVVYKAEEQI VQPFWKEGFR TYDVTLDKDA 480 GVFNCTCQLF EFKGILYKHI IQCMVKENIK SIPDKYILDR WRKDLIRGYE YIRVGYYNPE 540 EVESVKRAMK VKAKNAYIEK ISLHNDETYA KFEKLSDEFV KQLEDIVGIE TVRSTLDATG 600 ISKVAGKRLV QPRECNMRHI AKNTPQRLDS QLKDPVDKRG TGRGPKPKQK TTRKRAGDDI 660 PQSPLSQRSR TLSEIDLFR

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MVESVENSID EVVSTEESPN PIDQAVNAVE GENGTNDDIA DPTVGMVFPN CDSFAEFIIS  60
YALKKGFEVF TRSNSLKPKF RNAGVSRKCG GKKESRYHMM ERFRLACKKG GRKRSGKSNV  120
TGCKAFFEGA IQDDGFVIKT VHLEHNHELD PGNSRFKVSA RTITDYFKER IVLNDRAGIP  180
ITNNFNAMVI EAGGHENLPF NHRDLRNLVN LERRLQRING DAAALEEYFV KMKIENPNFF  240
YAIKKDNNEG RLHNVFWADA RYRAMFKVFG DVVTYDTTFL CNRYRLPFSP FIGVNHHGNS  300
ICFTAALITN EDTEMFIWVF ERWLECMGKA PPVILSDQDK AIGKAIETVF PGMSSTPRSE  360
QSNRFFKVRV SLETGLRNFM TQFDLAQQSK VEDEKTQNFI CKDRPLPYDK SVLVEEVFSK  420
LYTNEKFKEV KEQVYAGIRM FISLVMRMRS YVVYKAEEQI VQPFWKEGFR TYDVTLDKDA  480
GVFNCTCQLF EFKGILYKHI IQCMVKENIK SIPDKYILDR WRKDLIRGYE YIRVGYYNPE  540
EVESVKRAMK VKAKNAYIEK ISLHNDETYA KFEKLSDEFV KQLEDIVGIE TVRSTLDATG  600
ISKVAGKRLV QPRECNMRHI AKNTPQRLDS QLKDPVDKRG TGRGPKPKQK TTRKRAGDDI  660
PQSPLSQRSR TLSEIDLFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-45	FAR1-related sequence 5