PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca3955.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 166aa MW: 18886.4 Da PI: 10.4878

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca3955.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	67.5	3.9e-21	8	89	54	128
NAM 54 eekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +fF++ +k+y+tg+rk+r+++ + +W++tgk+++vl +g++ g kk+Lv+y g+++k++kt+Wvmh+y+l Dca3955.1 8 DGQIRHFFHRPSKAYTTGTRKRRKVHtdedgsETRWHKTGKTRPVLI-NGRVRGYKKILVLYtnYGKQRKPQKTSWVMHQYHL 89 44456****************744446555788********.999*******6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.125	1	108	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-23	8	108	IPR003441	NAC domain
Pfam	PF02365	9.6E-8	13	89	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MKGGVNKDGQ IRHFFHRPSK AYTTGTRKRR KVHTDEDGSE TRWHKTGKTR PVLINGRVRG 60 YKKILVLYTN YGKQRKPQKT SWVMHQYHLG IDEEEKDGEL VVSKVFYQTQ PRQCGSILKL 120 GGKTGTPSTR NEASEYYNQT SVISFEQRSS GPGTGSTTVV FPFCCP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021733365.1	7e-96	LOW QUALITY PROTEIN: NAC domain-containing protein 73-like
Swissprot	O49459	4e-67	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	T2CBH3	9e-85	T2CBH3_9CARY; Putative NAC domain class transcription factor
STRING	XP_010689784.1	8e-94	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	2e-69	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]