PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca39618.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HB-other

Protein Properties

Length: 454aa MW: 51484.1 Da PI: 7.323

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca39618.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.5	8.2e-12	22	58	21	57
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++yp+++ ++e+A l+Lte+qV+ WF+ rR k+k+ Dca39618.1 22 EHKYPTESLKAEIAVMLNLTEKQVSGWFCHRRLKDKR 58 589********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0013	14	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.18E-10	20	64	IPR009057	Homeodomain-like
CDD	cd00086	1.81E-8	22	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-11	22	58	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.774	22	59	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-9	22	58	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MSLGFYLSPF VDIIRNLLVN TEHKYPTESL KAEIAVMLNL TEKQVSGWFC HRRLKDKRLL 60 EDLQAPRKQD NLSSGVIQDR ASGLKQDSCS STKQADHKRA DLREVESRRL CPENLSVVEL 120 NHHQRRLGDG TQVDNSHDTS SESNSARHES FYRQWSNTAT DYRALNGFSQ PSRGRVGPSG 180 YLKIKGQTEN AAITAVKRQL GRHYREDGPS LGIEFDPLPP EAFDSPSENV NDYAYGVAEP 240 GSFGPHDMSG FYKRPELSPV RDEKLYETPR DTYLHKSDPN KFAFRQPKQK SAFLNNLGFP 300 GQKSSFGIDS YSALENSDYN TSRNLSVQRK QDFPRMRSDS QFDCPPQSYG GNNVTSLSNP 360 MDDFVPGYDT MNPKVVRQRE RFLSKPIRYK DAMPLDTTTK GNKRVREEVL EEDYPIRKTP 420 QDASLWSKPI KGPSEMPSSL SEDETALTSS SMDE

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MSLGFYLSPF VDIIRNLLVN TEHKYPTESL KAEIAVMLNL TEKQVSGWFC HRRLKDKRLL  60
EDLQAPRKQD NLSSGVIQDR ASGLKQDSCS STKQADHKRA DLREVESRRL CPENLSVVEL  120
NHHQRRLGDG TQVDNSHDTS SESNSARHES FYRQWSNTAT DYRALNGFSQ PSRGRVGPSG  180
YLKIKGQTEN AAITAVKRQL GRHYREDGPS LGIEFDPLPP EAFDSPSENV NDYAYGVAEP  240
GSFGPHDMSG FYKRPELSPV RDEKLYETPR DTYLHKSDPN KFAFRQPKQK SAFLNNLGFP  300
GQKSSFGIDS YSALENSDYN TSRNLSVQRK QDFPRMRSDS QFDCPPQSYG GNNVTSLSNP  360
MDDFVPGYDT MNPKVVRQRE RFLSKPIRYK DAMPLDTTTK GNKRVREEVL EEDYPIRKTP  420
QDASLWSKPI KGPSEMPSSL SEDETALTSS SMDE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673742.1	1e-135	PREDICTED: homeobox-DDT domain protein RLT1
TrEMBL	A0A0K9RSS5	1e-128	A0A0K9RSS5_SPIOL; Uncharacterized protein
STRING	XP_010673742.1	1e-135	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-43	HB-other family protein