PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39619.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SRS
Protein Properties Length: 435aa    MW: 45743.8 Da    PI: 8.822
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39619.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702195.91.3e-602063815153
      DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaeskk 98 
                 ta+CqdCGnqakkdC h+RCRtCC+srgfdC thvkstWvpaa+rrerq                   +++  k++r     +++++s+t++s++++++
  Dca39619.1 206 TATCQDCGNQAKKDCGHRRCRTCCRSRGFDCLTHVKSTWVPAARRRERQLLGGGRGGGGGGGGgassgSTSGVKKPRL---VSSTTTSHTSTSNTNTNT 301
                 789*********************************************877665544333322333334445555554...566777777777777777 PP

      DUF702  99 eletss........................lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
                 +++t++                        lP +v+++avf+cv+vs+v d g++e+aYq++v+igGh+fkG+LydqGl+
  Dca39619.1 302 NTNTNNninstpprsfetgsshqdasfketLPGQVRAPAVFKCVKVSAVVDgGNDEFAYQAVVKIGGHIFKGFLYDQGLD 381
                 777777778899************************************8776999***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.1E-58206381IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.5E-26208250IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.6E-27332380IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSRRLLDMCL HMSRSLLDMC RYMSRRLLDM CRYMSRSLLD MYLYMSRRLL DMCRHMSRIA  60
VATTRRLASD CGAFADWVAS SASNHSSDAN NNNNNNNNNN NNNNNNIINT DDLSLGFMAG  120
PAQPAGPSRV GYGLPPEMGM FVVTPATSFG PIFPHQPDPG PGPGAFMWPH SNPNSYMTPE  180
GKRGTINFDP GGGPGTGSGS GSGGLTATCQ DCGNQAKKDC GHRRCRTCCR SRGFDCLTHV  240
KSTWVPAARR RERQLLGGGR GGGGGGGGGA SSGSTSGVKK PRLVSSTTTS HTSTSNTNTN  300
TNTNTNNNIN STPPRSFETG SSHQDASFKE TLPGQVRAPA VFKCVKVSAV VDGGNDEFAY  360
QAVVKIGGHI FKGFLYDQGL DPRDGFPNFS DLHLGGGGGG GSGGGEIVPD DVYVASRGGG  420
GGGGLVDGSN YGNAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257265GGRGGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502940.22e-88protein LATERAL ROOT PRIMORDIUM 1-like, partial
TrEMBLA0A371E5I39e-91A0A371E5I3_MUCPR; Protein LATERAL ROOT PRIMORDIUM 1 (Fragment)
STRINGXP_009604000.12e-84(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.27e-63Lateral root primordium (LRP) protein-related