PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39623.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 287aa    MW: 33718.6 Da    PI: 8.8596
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39623.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1171.1e-36161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ +sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fk+g+k+ll++i+
    Dca39623.1  16 FLTKTYQLVDDPRTDHIVSWGEDDTSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFKRGEKHLLCEIH 103
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
    Dca39623.1 104 RRKS 107
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-397100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6012105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3513105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMFTVTETQK SVPAPFLTKT YQLVDDPRTD HIVSWGEDDT SFVVWRPPEF ARDLLPNYFK  60
HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FKRGEKHLLC EIHRRKSPTH HNQIHYQDQV  120
LIPPQYLQTT SSLDNENGPW INIDHHHHNI INNNNNNSPL ISPKPTNNGH SNDILTALTE  180
DNQRLRKRNY MLLSELNHMK RLYNDIIYFI QNHVKPIPSN NSSNNNNSNI ASPSKFIELD  240
DNYFQNQDNQ EMSSTTRVNK VQSRETIRLF GVPLHSKKRL HLAEGNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-221210517120Heat shock factor protein 1
5d5u_B4e-221210526129Heat shock factor protein 1
5d5v_B4e-221210526129Heat shock factor protein 1
5d5v_D4e-221210526129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734249.11e-139heat stress transcription factor B-4-like isoform X1
RefseqXP_021734250.11e-139heat stress transcription factor B-4-like isoform X2
RefseqXP_021734251.11e-139heat stress transcription factor B-4-like isoform X2
SwissprotQ9C6351e-89HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0K9QJR51e-128A0A0K9QJR5_SPIOL; Uncharacterized protein
STRINGXP_010673780.11e-137(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-86heat shock transcription factor B4