PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39672.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HB-other
Protein Properties Length: 378aa    MW: 42573.9 Da    PI: 4.4503
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39672.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-09309356653
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 +++k q+e+Le+++++++ p+ +++  + + ++L+ r+V  WF  +R+
  Dca39672.1 309 RLKKVQVETLENVYRRTKRPTNAMISSIVHVTNLPRRRVVKWFEDQRT 356
                 57899**************************************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.054301355IPR001356Homeobox domain
CDDcd000862.57E-7304355No hitNo description
SuperFamilySSF466891.63E-9304360IPR009057Homeodomain-like
SMARTSM003894.4E-6307365IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-9309358IPR009057Homeodomain-like
PfamPF000465.7E-7309356IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSYTTTVHHT SSIKLSNFPS SSSSSSFHNN HHLFSTNLSL PRVPLRRCFL SLARRRSNSG  60
RPASSSKSKS RKTGGSKKGA DVDEDAFEAL FKQLEEDLKK DGEFVDDGED DISEEDLALL  120
ERELGEALAF DEDLSELLNL DTDDAVGVKA GSDVVVEDVV NDNDEEDDSV DDEEEEEEEE  180
EEEETEDEDE EAAEPIKLRG WQLRRLAQAL KVGRRKTSIK KLAAELCIDR AIVLELLREP  240
PPNLLMMCAA LPDKQEPAIT NNNSETVPSV ASEEIVESEE TESEPNEKPE TKTDKPIHVL  300
QGSWSAQKRL KKVQVETLEN VYRRTKRPTN AMISSIVHVT NLPRRRVVKW FEDQRTADGV  360
PEEHRPYRRS ASESVFAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737964.11e-125protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
TrEMBLA0A0K9RB511e-115A0A0K9RB51_SPIOL; Uncharacterized protein
STRINGXP_010670653.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-51overexpressor of cationic peroxidase 3