PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39736.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 204aa    MW: 22107.2 Da    PI: 7.7745
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39736.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-192271255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++GVr ++ +gr++AeIrdp++   ++r++lg+f+ta +Aa+a++ a+++l+g
  Dca39736.1 22 KFRGVRKRP-WGRFAAEIRDPVK---KTRVWLGTFDTAVDAARAYDIAALNLRG 71
                89*******.**********654...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-122271IPR001471AP2/ERF domain
PROSITE profilePS5103222.5762279IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-212279IPR016177DNA-binding domain
CDDcd000182.49E-312278No hitNo description
Gene3DG3DSA:3.30.730.101.7E-302278IPR001471AP2/ERF domain
SMARTSM003805.1E-372285IPR001471AP2/ERF domain
PRINTSPR003675.2E-102334IPR001471AP2/ERF domain
PRINTSPR003675.2E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRKVRSTVAP PPSSDPPSAD VKFRGVRKRP WGRFAAEIRD PVKKTRVWLG TFDTAVDAAR  60
AYDIAALNLR GPKAKTNFLT PLLPSAAGDH RRRTPEMEAA EVEIMIQRPA TSGMSSTVES  120
YSGPKPVHVR SSCEKTKLPP LDCRSDCDSS SSVIDCEDVA DIASSSAVAE VAVNFTKCPL  180
PFDLNLPPVD FSGLDDYPST TLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-202378662ATERF1
3gcc_A7e-202378662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849043.15e-50ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV081e-53A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGXP_010675777.15e-45(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.18e-27ethylene responsive element binding factor 3