PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39766.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 280aa    MW: 31323.9 Da    PI: 6.3545
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39766.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.9e-2767127158
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                 l+Dg++WrKYGqK + g++fpr+YYrCt++   +C+++k+v++s++dp++ +++Y+geH++
  Dca39766.1  67 LNDGFSWRKYGQKGIFGAKFPRGYYRCTYRhskSCTATKQVQQSDDDPSIYQVMYKGEHTC 127
                 58**************************998899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.71362125IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-2664127IPR003657WRKY domain
SuperFamilySSF1182902.88E-2466128IPR003657WRKY domain
SMARTSM007742.6E-3667129IPR003657WRKY domain
PfamPF031061.3E-2568127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMSTFDKTIT IANQINSHNP LIVDSPKSEN SQPCQPVSKR RKTMQKRWTK TVKISPDKPV  60
NGLEGPLNDG FSWRKYGQKG IFGAKFPRGY YRCTYRHSKS CTATKQVQQS DDDPSIYQVM  120
YKGEHTCCPR PNNFLAQARY DSPPQPIKSP PKHLSISNPI TTHEVFLGLG PQGDLEIEPN  180
PTDKAQIFRA FSFNSSVLEN EYIDNLLDYS VIMDSPTTSG SNYFSTMSYG DIGPSVGLNV  240
LISESDGNSS NSGQNSVNNS PTTDDFEFPL EWLDIDPNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-2067127868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748208.15e-79probable WRKY transcription factor 41
TrEMBLA0A0K9R5K52e-71A0A0K9R5K5_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-35WRKY family protein