PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca39946.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 295aa MW: 33345.5 Da PI: 7.8097

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca39946.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.3	1.3e-44	11	138	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ppG+rFhPtdeel ++yLk+k+ gk+l+ ++++e+d+y++ Pw+Lp k ++k+++ +wyf ++r++ky++g r+nr t +g+Wk++g+d++v +++ Dca39946.1 11 PPGIRFHPTDEELFMYYLKRKLLGKSLRH-QIMSEIDVYQFAPWELPaKsCLKTRDLNWYFICPRSRKYPSGGRTNRGTVHGFWKSSGNDRTVNY-RNR 107 9***********************999.89**********95357778888*********************************9.899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 vg ktL+fy+g+ pkge+t+Wv+heyrle Dca39946.1 108 PVGKIKTLIFYRGKPPKGERTNWVIHEYRLE 138 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-54	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	51.933	10	160	IPR003441	NAC domain
Pfam	PF02365	7.8E-22	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDTALVSKSF PPGIRFHPTD EELFMYYLKR KLLGKSLRHQ IMSEIDVYQF APWELPAKSC 60 LKTRDLNWYF ICPRSRKYPS GGRTNRGTVH GFWKSSGNDR TVNYRNRPVG KIKTLIFYRG 120 KPPKGERTNW VIHEYRLEDK VLSEKGVALD SYVICKIFMK SGLGPKNGEN YGAPFMEEEW 180 DNSNDENVAS AQQQQQSVSV DIAGCSNGST ITSTLASPST LSTVQPYVAT TKGLPPIETE 240 EDELDRLLAK FTEECHNKPT PQSNVVDGLG NLAGRSSATS ANFDWSKFDW YDLCD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	5	160	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	5	160	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	5	160	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	5	160	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-46	5	160	15	168	NAC domain-containing protein 19
3swm_B	3e-46	5	160	15	168	NAC domain-containing protein 19
3swm_C	3e-46	5	160	15	168	NAC domain-containing protein 19
3swm_D	3e-46	5	160	15	168	NAC domain-containing protein 19
3swp_A	3e-46	5	160	15	168	NAC domain-containing protein 19
3swp_B	3e-46	5	160	15	168	NAC domain-containing protein 19
3swp_C	3e-46	5	160	15	168	NAC domain-containing protein 19
3swp_D	3e-46	5	160	15	168	NAC domain-containing protein 19
4dul_A	2e-46	5	160	12	165	NAC domain-containing protein 19
4dul_B	2e-46	5	160	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269\|PubMed:24045017}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00583	DAP	Transfer from AT5G64060	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold and drought stresses. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010674451.1	1e-106	PREDICTED: NAC domain-containing protein 82
Swissprot	Q9XIC5	1e-66	NAC17_ARATH; NAC domain-containing protein 17
TrEMBL	A0A0K9RG69	1e-97	A0A0K9RG69_SPIOL; Uncharacterized protein
STRING	XP_010674451.1	1e-105	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	2e-76	NAC domain containing protein 103

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Van Aken O,Ford E,Lister R,Huang S,Millar AH Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance. Plant J., 2016. 88(4): p. 542-558 [PMID:27425258] Hu Z, et al. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. Plant Cell, 2016. 28(9): p. 2276-2290 [PMID:27543091] Chi YH, et al. The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis. Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647 [PMID:28088515] Van Aken O,Pogson BJ Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death. Cell Death Differ., 2017. 24(6): p. 955-960 [PMID:28498364] Cheng P, et al. The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]