PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39953.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 677aa    MW: 72650.6 Da    PI: 7.2554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39953.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-16432478455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Dca39953.1 432 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 478
                 5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.8E-20425486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-17431482No hitNo description
PfamPF000101.2E-13432478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-20432501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MNVRRWYCNS LSCGDTNSVF FCTDLAPVFW WRTGCRPEAD FCELVWENGH LMMQGQSSKN  60
GNQSHKSQDG RDANRLKMNN FSTMDSLLGD FPSVVPSSDM GLGQDGDMVP WLSFPDAYTC  120
EFMPELSGVT LNNISTDNHL AHREKKSGSY GDGHRNSMSL KHCDASKVDS KTVKCGKGQN  180
SEVPQFALSS QNNVLRSGVS GVTGENAGNT HNVASRDFNS SSLCAFTGTR LQKLDAGQPS  240
TSSSFANFPY FSRSAALAKA NHLSENASYR LGNNQQRCTV PSSNPTDSML VNLASACSRK  300
ELGIQNPSVQ APVSENPELV KKQTDELITA KTVNHREDVV KDTQQNHALD ATMSKVGAIG  360
DGNVVPAVAA SSVCSGNSVD KASNERGNDL KRKLRENTES EGPSEEVDDE SVGAKKAAHA  420
RVSSKRIRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ  480
VQMFTMGAGM YMQPMMLPPG MQPIHGAQIP HFSPMGLGMG MGMGMGMGYG MNMLDANGGM  540
KMMPFQSPHY PVPGAAAPFH GMPGSSLLQP FGHPSQGFQM PIPRSSVHPI PAPPPANILP  600
IGLNASGVAG SSGACNVAPP CLQAIPGNSP NIFMNQAINQ QAAKESNQPS ASSHDRIQAV  660
NAAGTSQDAI GTDNAVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436441ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772526.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A0K9RD810.0A0A0K9RD81_SPIOL; Uncharacterized protein
STRINGXP_010674470.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-35phytochrome interacting factor 3