PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca4006.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 1410aa MW: 156403 Da PI: 4.6473

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca4006.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	447	469	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC++C+++F+ k++L +H+ + H Dca4006.1 447 KCHKCSTPFNEKDELLKHLIScH 469 8******************9955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.54	446	469	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.369	446	474	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	448	469	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	491	513	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	493	513	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1410 aa Download sequence Send to blast
MASATVGPSP PPPPSDHLTV ESIPTVDLRR LTQSELAALA LCSSRAVDLR RCDDVVIPKI 60 DRSVFNESAG SRKQTYSRLR LAPRNNPNLI DSAAAAAKPR RVTPEPPVLD AEHAENLRIV 120 SLFKSLFNLS NGVDVSSNDD VENHDGCGGG GGDELALVPV SVTYCDTVPG DKKRKRGRKP 180 KSETSLEMTV FEEKKAEDEA AEVEVMEEEE EEEDEETAEE VAAVTVEEVQ RRWEESEKEL 240 VNKNGVVVNL AELAKAEDPY TVELKRLTEG KETAEELLGF VNDLEGEWGS RRKKRKIVDA 300 NLIGDFLPNG WKILIAIKKK QGRAWVFCRR YVRLFLPSFR LSSPNGRYFV SCKEVSSYLI 360 SLTGSQEPKE QPAVEDPDIT AVDVASKNAV ETETKVEHQA IPDSSLFKDR EDRHMHLNIS 420 PNLENRVTPS KDVQLGEVHE LSTSALKCHK CSTPFNEKDE LLKHLISCHK RKRRKAGVYI 480 ENDDLLKDGK YECQFCDKVY LDRGSYFGHV GIHVKNYLKS AGGSSSVKAK QKTFKPVSIG 540 EVSLSVSETL GSTELIAESG AGTQNMLGNG ELNNDCKEKK ITAPDAERLS ENEKNDHSSY 600 TRPMELNAAQ TDKTLDCESS GKQEAADHIA NKNTTEVDCT NKNTTEVDCP GSDKVVLDYS 660 DNYQEIISSE FVSPEAIERP PVVAENSEAY LSSDSKLSDF GADSSFVTEN VLETEERLTS 720 EFDLAAGNEG KSSNQSFAKC YLVNNPVERY CYDEEVNVMH HQGLTEVSGS GHIDVDMVDE 780 DDIKGLESME ESSAVPFTAE ESCGVIMNKT ENIESKVSTL SDDQQTKTLM VNKRHDFADL 840 VNETEVDLSS FENTELTDDY ERIIQERHCE SNVQFYSKDN VSNYSSNEAV RGSNVKMVQP 900 SGVRDFQQFK HSCSTENNTG EVLNKQGEEH TGNLFFQSRS RDSHLDTTDI TNTDQSHNHV 960 PDVLRSFDSY VDDKQAQVSK SLFYALSMNE HSREVAMNDV GNVSTSTTTM HLPELEKVDS 1020 SRSSNLLLDF NNITEMNGNF LSSAQHGAVP EETSPFQLWG QQSNGLVDSQ TKVYGGGSTF 1080 LQQARASQNN SLNLVGHQRQ STEGYNLNEV CMNEQRYGQR NKLGVFSRNN EARTEGISHG 1140 NALNLAGYQQ QCDLGYNLNK PCISQQSYGV QHTESGSYNH LNQARQDRVA YGNSLSLASV 1200 QQCDSRYSLN KTRDQQPVDT GYSLNKGYVD SRDRDLMIGF GNSGGRRNQT GTTDFLWGSN 1260 DGSILPGGLV DSSSSQAQSS GSFQPFDFLS DKSGNDLYNA NGKFDNMSSF EGLRSSVEPM 1320 EFSFMTPQES NPQLEHPKVL QYNTEINQSF GSWDQKTTTL PNMMPNHVVT VMCVWCGNEF 1380 HQDSLSCEMQ AGSIGSLCPS CKARMSGQFL

Sequence ? help Back to Top

Protein Sequence Length: 1410 aa Download sequence Send to blast

MASATVGPSP PPPPSDHLTV ESIPTVDLRR LTQSELAALA LCSSRAVDLR RCDDVVIPKI  60
DRSVFNESAG SRKQTYSRLR LAPRNNPNLI DSAAAAAKPR RVTPEPPVLD AEHAENLRIV  120
SLFKSLFNLS NGVDVSSNDD VENHDGCGGG GGDELALVPV SVTYCDTVPG DKKRKRGRKP  180
KSETSLEMTV FEEKKAEDEA AEVEVMEEEE EEEDEETAEE VAAVTVEEVQ RRWEESEKEL  240
VNKNGVVVNL AELAKAEDPY TVELKRLTEG KETAEELLGF VNDLEGEWGS RRKKRKIVDA  300
NLIGDFLPNG WKILIAIKKK QGRAWVFCRR YVRLFLPSFR LSSPNGRYFV SCKEVSSYLI  360
SLTGSQEPKE QPAVEDPDIT AVDVASKNAV ETETKVEHQA IPDSSLFKDR EDRHMHLNIS  420
PNLENRVTPS KDVQLGEVHE LSTSALKCHK CSTPFNEKDE LLKHLISCHK RKRRKAGVYI  480
ENDDLLKDGK YECQFCDKVY LDRGSYFGHV GIHVKNYLKS AGGSSSVKAK QKTFKPVSIG  540
EVSLSVSETL GSTELIAESG AGTQNMLGNG ELNNDCKEKK ITAPDAERLS ENEKNDHSSY  600
TRPMELNAAQ TDKTLDCESS GKQEAADHIA NKNTTEVDCT NKNTTEVDCP GSDKVVLDYS  660
DNYQEIISSE FVSPEAIERP PVVAENSEAY LSSDSKLSDF GADSSFVTEN VLETEERLTS  720
EFDLAAGNEG KSSNQSFAKC YLVNNPVERY CYDEEVNVMH HQGLTEVSGS GHIDVDMVDE  780
DDIKGLESME ESSAVPFTAE ESCGVIMNKT ENIESKVSTL SDDQQTKTLM VNKRHDFADL  840
VNETEVDLSS FENTELTDDY ERIIQERHCE SNVQFYSKDN VSNYSSNEAV RGSNVKMVQP  900
SGVRDFQQFK HSCSTENNTG EVLNKQGEEH TGNLFFQSRS RDSHLDTTDI TNTDQSHNHV  960
PDVLRSFDSY VDDKQAQVSK SLFYALSMNE HSREVAMNDV GNVSTSTTTM HLPELEKVDS  1020
SRSSNLLLDF NNITEMNGNF LSSAQHGAVP EETSPFQLWG QQSNGLVDSQ TKVYGGGSTF  1080
LQQARASQNN SLNLVGHQRQ STEGYNLNEV CMNEQRYGQR NKLGVFSRNN EARTEGISHG  1140
NALNLAGYQQ QCDLGYNLNK PCISQQSYGV QHTESGSYNH LNQARQDRVA YGNSLSLASV  1200
QQCDSRYSLN KTRDQQPVDT GYSLNKGYVD SRDRDLMIGF GNSGGRRNQT GTTDFLWGSN  1260
DGSILPGGLV DSSSSQAQSS GSFQPFDFLS DKSGNDLYNA NGKFDNMSSF EGLRSSVEPM  1320
EFSFMTPQES NPQLEHPKVL QYNTEINQSF GSWDQKTTTL PNMMPNHVVT VMCVWCGNEF  1380
HQDSLSCEMQ AGSIGSLCPS CKARMSGQFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	179	DKKRKRGRKP
2	469	474	KRKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740226.1	0.0	uncharacterized protein LOC110706595
TrEMBL	A0A0K9RTD1	0.0	A0A0K9RTD1_SPIOL; Uncharacterized protein
STRING	XP_010676391.1	0.0	(Beta vulgaris)