PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca4023.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 218aa MW: 25001.4 Da PI: 9.4121

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca4023.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89	8.5e-28	18	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a...................... 77 lppGfrFhPtdeel+v+yLk+++ ++++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfF++++ + g + r Dca4023.1 18 LPPGFRFHPTDEELIVHYLKNQAMSRPCPV-SIIPEVDIYKFDPWQLPDKAEFGENEWYFFTPSRVLNI-GIGRDRgCgrgvtvsalnrlsrtmtrssrk 115 79**************************.89***********99999******988766.333333135666777777777778888888 PP NAM 78 ........tksgyWkatgkdkevlsk.....kgel..........vglkktLvfykg.rapkgektdWvmheyrl 128 +++++ ++t + ++v s+ + + + +++ + +g pkg+ktdW+mheyrl Dca4023.1 116 vreispylVSAATESETSRPRRVNSAeilnpD--TkrpevpewdpTQSSHVIGLLEGnGPPKGSKTDWIMHEYRL 188 88888887445555677777777665555442..044677777779999999999985689**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-28	9	82	IPR003441	NAC domain
PROSITE profile	PS51005	33.19	18	215	IPR003441	NAC domain
Pfam	PF02365	2.0E-14	19	188	IPR003441	NAC domain
SuperFamily	SSF101941	7.59E-11	171	215	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MHTSSIIMEG HSSRSSNLPP GFRFHPTDEE LIVHYLKNQA MSRPCPVSII PEVDIYKFDP 60 WQLPDKAEFG ENEWYFFTPS RVLNIGIGRD RGCGRGVTVS ALNRLSRTMT RSSRKVREIS 120 PYLVSAATES ETSRPRRVNS AEILNPDTKR PEVPEWDPTQ SSHVIGLLEG NGPPKGSKTD 180 WIMHEYRLTE AKHQPLKQHG SMRLDDWVLC RIYKKRSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-39	17	217	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-39	17	217	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-39	17	217	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-39	17	217	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-38	17	217	19	170	NAC domain-containing protein 19
3swm_B	1e-38	17	217	19	170	NAC domain-containing protein 19
3swm_C	1e-38	17	217	19	170	NAC domain-containing protein 19
3swm_D	1e-38	17	217	19	170	NAC domain-containing protein 19
3swp_A	1e-38	17	217	19	170	NAC domain-containing protein 19
3swp_B	1e-38	17	217	19	170	NAC domain-containing protein 19
3swp_C	1e-38	17	217	19	170	NAC domain-containing protein 19
3swp_D	1e-38	17	217	19	170	NAC domain-containing protein 19
4dul_A	9e-39	17	217	16	167	NAC domain-containing protein 19
4dul_B	9e-39	17	217	16	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021747028.1	2e-68	NAC transcription factor 29-like
Swissprot	K4BWV2	5e-58	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A0K9RTR3	1e-65	A0A0K9RTR3_SPIOL; Uncharacterized protein
STRING	XP_010683140.1	1e-65	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	4e-55	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]