PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca40234.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARR-B
Protein Properties Length: 561aa    MW: 61770.2 Da    PI: 6.6752
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca40234.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.82.5e-28201254155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ +LH++Fv av+qL G +kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Dca40234.1 201 KPRVVWSVDLHRKFVAAVNQL-GLDKAVPKKILELMNVEKLTRENVASHLQKYRL 254
                 79*******************.********************************8 PP
2Response_reg77.74e-26201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll+++l+k +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ +++ + +  Ga 
    Dca40234.1  20 VLAVDDDPICLRLLETLLRKCQY-HVTTTSQAITALKMLRENKnmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMKGITHGAC 114
                   799********************.***************999999*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d++ Kp+  eel +
    Dca40234.1 115 DYFLKPIRLEELKN 128
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.2E-1631560IPR017053Response regulator B-type, plant
SuperFamilySSF521721.57E-3517142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-4217168No hitNo description
SMARTSM004482.1E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.17919134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.65E-2721133No hitNo description
SuperFamilySSF466891.47E-19198258IPR009057Homeodomain-like
PROSITE profilePS5129411.156198257IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-30199259IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-25201254IPR006447Myb domain, plants
PfamPF002494.5E-7203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MTVERRKDEN NDQFPVGMRV LAVDDDPICL RLLETLLRKC QYHVTTTSQA ITALKMLREN  60
KNMFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYFLKP  120
IRLEELKNIW QHVVRRKKSD PRDRNSSNIL DKDCTEGNGT TGTNSDQDAN FCRKRKEQNA  180
DEYEEQDEND SDNDDPSTQK KPRVVWSVDL HRKFVAAVNQ LGLDKAVPKK ILELMNVEKL  240
TRENVASHLQ KYRLYLKRIS SVANQQANMV AALGGPDYLR MNAVNFHNFN ASAQFQNNSF  300
GPISSAGVLG RLNSPAGLGL NGLSLSGMVQ LGHSQIPSGP ITNNPKFHAG PLPVDQSNAV  360
LQGMPTSLEF DQLQHKTVST NIIVNPLIMQ GCSHERRNVR NAGVTSDCST NIGDHSRSNS  420
NWGGAVQSEA SSMHDISPNI SSNVLNHSTR PDMGFVNDNL GANMSYGQKQ YWDSGKPEFV  480
NHGSYVDGSL NSSMGAQGAY LCGSGSDLRS RNGRFDSLAN QQSELVQNTG FVDNGGRSMG  540
SYAVNSAGSL EDVVTAMFNR V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25197260164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665924.10.0PREDICTED: two-component response regulator ORR24 isoform X1
SwissprotQ6K8X61e-142ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A0K9QPN00.0A0A0K9QPN0_SPIOL; Two-component response regulator
STRINGXP_010665924.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-125response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]