PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca40280.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 763aa MW: 88378.6 Da PI: 8.0946

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca40280.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.6	4e-08	97	188	4	90
FAR1 4 neYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA + GF+v ++++ + + + ++r+f +ke + + ++ + +++ +++++ tgCka ++ +e ++ +++++++l+HnHel Dca40280.1 97 FTYAMKKGFEVFTRSNVINpEYKAAGVSREFGGKKEPRYHMMDRLrlackKGRRKCSENSNVTGCKAVFEGALE-NDGFQIKSVRLDHNHELD 188 58*******99998888555555688889888877776666658998677777799999********9.999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-6	97	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-30	271	364	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.695	556	592	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-5	558	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.0E-4	567	594	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MSNNGGLFDL NEYFDEDFDG DDAFDEEIEA NEVHNYGRSV ESVQNSIDEV GSTEESPNLV 60 QQAVNVVEAE NLNNEDIVEP KVGMIFPNCE SFAAFIFTYA MKKGFEVFTR SNVINPEYKA 120 AGVSREFGGK KEPRYHMMDR LRLACKKGRR KCSENSNVTG CKAVFEGALE NDGFQIKSVR 180 LDHNHELDPA NSRFTISARI ITNYLKKRIL LNDRAGIPIT KNFNAMVLEA GGHENLPFNR 240 RDLRNLVNLE RRLERINDAR CRAMFKVFGD VVTYDTTFLC NRYPLPFSPF IEVNHHGNSI 300 CFAAALITNE DTDTFIWVFE RWLECMGKAP PVILSDQDKA ISKAIETVFP GTPHRLCLWH 360 MMKNAIKNLG RYGFWKELCS DLKVVVHDTL SEEEFEQGWS VMVDKFGVHD NAWIKEAYNI 420 RKRWVPAYWR GTFCAGMSST QRSEQANRFF KIRVSLETGL RNFITQFDLA QQSRVEDERT 480 QNFICKDRPL PYDKSVLVEE VFSKLYTNEK FKEVKEQVYA GIRTFIELVM RMGSYVVYKA 540 EEQIVQPFWK EGFRTYEVTI DKDMGVFKCS CQLFEFKGIL CKHIIQCIVK ENIKSIPETY 600 ILDRWRKDLI RGYEHIRVGY YNPEEVESVK RAMKVKNKNA YIEKLSLHND ETYAMYEKVS 660 DDFVKQLENI VGIETVRSTL DANGISKVVG RRRTQPRECN MRHIARNTTQ RSNSQLKDPI 720 DKRGTGRGPK PKQTTTRKRK SDAIPQSPLS QRSRVSSELE LFR

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MSNNGGLFDL NEYFDEDFDG DDAFDEEIEA NEVHNYGRSV ESVQNSIDEV GSTEESPNLV  60
QQAVNVVEAE NLNNEDIVEP KVGMIFPNCE SFAAFIFTYA MKKGFEVFTR SNVINPEYKA  120
AGVSREFGGK KEPRYHMMDR LRLACKKGRR KCSENSNVTG CKAVFEGALE NDGFQIKSVR  180
LDHNHELDPA NSRFTISARI ITNYLKKRIL LNDRAGIPIT KNFNAMVLEA GGHENLPFNR  240
RDLRNLVNLE RRLERINDAR CRAMFKVFGD VVTYDTTFLC NRYPLPFSPF IEVNHHGNSI  300
CFAAALITNE DTDTFIWVFE RWLECMGKAP PVILSDQDKA ISKAIETVFP GTPHRLCLWH  360
MMKNAIKNLG RYGFWKELCS DLKVVVHDTL SEEEFEQGWS VMVDKFGVHD NAWIKEAYNI  420
RKRWVPAYWR GTFCAGMSST QRSEQANRFF KIRVSLETGL RNFITQFDLA QQSRVEDERT  480
QNFICKDRPL PYDKSVLVEE VFSKLYTNEK FKEVKEQVYA GIRTFIELVM RMGSYVVYKA  540
EEQIVQPFWK EGFRTYEVTI DKDMGVFKCS CQLFEFKGIL CKHIIQCIVK ENIKSIPETY  600
ILDRWRKDLI RGYEHIRVGY YNPEEVESVK RAMKVKNKNA YIEKLSLHND ETYAMYEKVS  660
DDFVKQLENI VGIETVRSTL DANGISKVVG RRRTQPRECN MRHIARNTTQ RSNSQLKDPI  720
DKRGTGRGPK PKQTTTRKRK SDAIPQSPLS QRSRVSSELE LFR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	735	740	TRKRKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-68	FAR1-related sequence 5