PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca40382.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 957aa MW: 110941 Da PI: 8.5714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca40382.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.2	2.2e-07	68	162	5	90
FAR1 5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle..leHnHela 90 e A++ GF ++k+++ ++ +r+ e + f+Cs++g+++ + ek +++ ++++++C+ +++ +++ +++ w++ + + HnH+l+ Dca40382.1 68 EIAQDNGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKGVYDP-EKPKKKPKTQKCDCRFRIRAVQNYhfvhNKRvvvWNIVTSDtfGCHNHALT 162 568999*99988765549999************9998887.777777888888888888755444455433311155555545568999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-4	68	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-25	277	372	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence Send to blast
MNMNVVDGKK YEYERPSYGR TSRFMSLVWT NVQDSFENLG GDNVDYNHLF VTEVCFEDRD 60 KAFDWANEIA QDNGFVLVKA NNGSKNRRQP ELLASYFRCS RYGRSKGVYD PEKPKKKPKT 120 QKCDCRFRIR AVQNYHFVHN KRVVVWNIVT SDTFGCHNHA LTKYKDGQRG YAGLDEDEKA 180 FVRQQYSNAV LPRDIKTGLH LKSPDKPQPS SKQIYNVTSK IRREVKGDRN PAQQMLALAV 240 EANYVHWHET NPLTLELTHV FMSHPEAVKL FRAYPHVVLM DSTYKTNIYK MTLVEVVGVT 300 PGGSSFLIAC VLIPMESEEG YMWLLRKLME ILECTGVSPS AFVTDRELGL VGALQNLFPD 360 TPHLFCRWHV NRAVENRALL IFKKEWYKNH VLHNPETGWY NVINSTTEEE FKVAWNAFST 420 KWIQLASYVS KTWGEHASKF VLCYTNEFFH LGNTATSRVE SAHSLLKAWL KSAHLTLDTM 480 WSRIHSMLEG QHSKIRKELE QSMSKPRITH RMFSLLHGSV SIKAIEIMEE EIKRGDALGV 540 GLEQRCGCAL RSTCGLPCSC ELIRLRDNSR RVHLGDIHVF WKTLVYDSND AMPKNDNDML 600 DELVEKARKS DPAYRKIFIE KLRDILHPED EDVKPPAVRD NPKGRPRGST TRSKSSFEHS 660 RNKYGTPSTD ASTNVEHRIC DFHAGEVGAP LEKNYTIGVF STWKKRFGVP ECLWSFFDGW 720 VDVGDDGHCG FRVISHAQRG QEEDYVVMRE WCVNEITTHD IYKSLFNATY KLVDGFTHYE 780 QTLRRIGFYK KSSCGDDHWM CSDHLKVFAS MFNWTICVIA RQRMTKGDYV WQCSTILPLR 840 RSSARAHPYG VLWILNHNLH WMRLHCKGPP REVPMPPIDP GWETFRDPNV AHLKSFYQTN 900 FDNWHTIMGT TPRAPRSRYT TAHESQASRQ LVFETWLDVQ YYVFQWTGFQ NYVLLLD

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence Send to blast

MNMNVVDGKK YEYERPSYGR TSRFMSLVWT NVQDSFENLG GDNVDYNHLF VTEVCFEDRD  60
KAFDWANEIA QDNGFVLVKA NNGSKNRRQP ELLASYFRCS RYGRSKGVYD PEKPKKKPKT  120
QKCDCRFRIR AVQNYHFVHN KRVVVWNIVT SDTFGCHNHA LTKYKDGQRG YAGLDEDEKA  180
FVRQQYSNAV LPRDIKTGLH LKSPDKPQPS SKQIYNVTSK IRREVKGDRN PAQQMLALAV  240
EANYVHWHET NPLTLELTHV FMSHPEAVKL FRAYPHVVLM DSTYKTNIYK MTLVEVVGVT  300
PGGSSFLIAC VLIPMESEEG YMWLLRKLME ILECTGVSPS AFVTDRELGL VGALQNLFPD  360
TPHLFCRWHV NRAVENRALL IFKKEWYKNH VLHNPETGWY NVINSTTEEE FKVAWNAFST  420
KWIQLASYVS KTWGEHASKF VLCYTNEFFH LGNTATSRVE SAHSLLKAWL KSAHLTLDTM  480
WSRIHSMLEG QHSKIRKELE QSMSKPRITH RMFSLLHGSV SIKAIEIMEE EIKRGDALGV  540
GLEQRCGCAL RSTCGLPCSC ELIRLRDNSR RVHLGDIHVF WKTLVYDSND AMPKNDNDML  600
DELVEKARKS DPAYRKIFIE KLRDILHPED EDVKPPAVRD NPKGRPRGST TRSKSSFEHS  660
RNKYGTPSTD ASTNVEHRIC DFHAGEVGAP LEKNYTIGVF STWKKRFGVP ECLWSFFDGW  720
VDVGDDGHCG FRVISHAQRG QEEDYVVMRE WCVNEITTHD IYKSLFNATY KLVDGFTHYE  780
QTLRRIGFYK KSSCGDDHWM CSDHLKVFAS MFNWTICVIA RQRMTKGDYV WQCSTILPLR  840
RSSARAHPYG VLWILNHNLH WMRLHCKGPP REVPMPPIDP GWETFRDPNV AHLKSFYQTN  900
FDNWHTIMGT TPRAPRSRYT TAHESQASRQ LVFETWLDVQ YYVFQWTGFQ NYVLLLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	PKKKPKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-16	FAR1-related sequence 5