PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca40643.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 250aa    MW: 28497.2 Da    PI: 8.806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca40643.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001395117223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C++++++  +L  H +  H
  Dca40643.1  95 SCSVCSRVYPTERLLSIHVSEmH 117
                 6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.896792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003551.294117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.89132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAVEAVVDGG GKSEFPFWNS MSRKFPPDSS FFFSGDLERQ FLSKQVALDL TEDDKRQMLT  60
EDLERSISCP IVGCDAQLKS LEGFEDHYNA RHTASCSVCS RVYPTERLLS IHVSEMHDSF  120
FQAKVARGFA MYECLVETCG LKFKSYKARH RHLVDKHKFP TSFEFSKKVH HSKKQRQKNW  180
RKKAHKEEAS SAMEVEDETM EGLVSAVSKL STSDSTPSSI SFGRRHNRGL TFVPRSVQHG  240
KSKNKNAEEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178KKQRQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447049.11e-125zinc finger protein 511
RefseqXP_006470078.11e-125zinc finger protein 511
TrEMBLV4W2X61e-123V4W2X6_9ROSI; Uncharacterized protein
STRINGXP_006470078.11e-124(Citrus sinensis)
STRINGXP_006447049.11e-124(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-103zinc ion binding;nucleic acid binding;zinc ion binding