PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca40914.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 380aa    MW: 41095.8 Da    PI: 6.6194
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca40914.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.9e-10182240563
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l se+
  Dca40914.1 182 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSSEN 240
                 9*********************************************9999888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-15178242IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955180243IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-11182233No hitNo description
PfamPF001706.0E-9182240IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-10182237No hitNo description
CDDcd147031.26E-23183232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEKEKSTGLP PTGKFPPFTP PPQTAAAAAS FSNDLSRMPE NPPKNTGHRR AHSEILTLPD  60
DISFDGDLGV VGGGGGVDGG ASFSDDTEED LVSMYIDMDK VNSATSSGFQ LGEASSSAAH  120
APVRGRHQHS QSMDGSTSLT PEMFVNGGGG GSGGGGEEVS PAEAKKAMSA AKLAELALID  180
PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLSSEN  240
NELKIRLQTM EQQVHLQDAL NDALKEEIQH LKMLTGQAMT NGGPMMNMPG FLGANQPFYP  300
NSQTMHTMLT AQQLQQLHIH SQKQPHQFPH HQLPLQQQQY HHPQEPSLQN TLLPDYKIRP  360
SGSAPSKEHA SDSLSGPSKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672248.11e-163PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-128POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2P5G0N31e-150A0A2P5G0N3_TREOI; Basic-leucine zipper transcription factor
STRINGXP_010672248.11e-162(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-121bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]