PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca40942.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 418aa    MW: 45721.7 Da    PI: 5.157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca40942.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13209260155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A+e++++L+
  Dca40942.1 209 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 260
                 79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.2E-14207263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-13207264No hitNo description
PROSITE profilePS5088815.288208259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16208275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10209260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9214265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MFETNHSNVM PSEMPAVDRT LSFADVMQFA DFGPKLSLNY SQIHQNNHTE NIINTTDNNN  60
NNIISRNEQD NITTTGVVDP VYFLKFPVLS NNDNDNNFEG GFGGGLEDIR GREFSFSHHE  120
NEQDGGACGS DYNNPVQLEF LGDAAAAADA GGGNNNTTDE NVVDISGDRF GGTEDAVAGG  180
GGMIVGKSGS SSKRKRPRTV KTTEEVESQR MTHIAVERNR RKQMNEHLRV LRSLMPSSYV  240
QRGDQASIIG GAIEFVRELE QLLQCLESQK RRRLYGDHPG PGPGPARPPS PSTMGLVVPQ  300
QPQHQHPLGF PPSTSSNQSQ DGEQQLHAAM DPLDPIGGGN GLLLQEDCAE SKSCIADVEV  360
KVLGFDALIK ILSRRRHGQL LKAIAALEDL QLTILHTNIT TIEQTVLYSF NVKVTNYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209220RMTHIAVERNRR
2269273KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750618.11e-134transcription factor FAMA-like isoform X2
TrEMBLA0A0J8BDA01e-119A0A0J8BDA0_BETVU; Uncharacterized protein
STRINGXP_010694945.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.12e-70bHLH family protein