PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca40952.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 976aa    MW: 111057 Da    PI: 7.8793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca40952.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06708732123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp  dC+ s++rk++L+rH+  H
  Dca40952.1 708 FVCPvdDCSASYRRKDHLNRHLTQH 732
                 89*******************9877 PP
2zf-C2H214.69.4e-05737762123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 +kCp  dC+k Fs + n  rH++  H
  Dca40952.1 737 FKCPvaDCSKEFSVHGNIARHLKEyH 762
                 89********************9988 PP
3zf-C2H218.65.3e-06774798123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk F+  s+L++H  +H
  Dca40952.1 774 HVCHiaGCGKEFKYASQLQKHEESH 798
                 79*******************9988 PP
4zf-C2H215.16.8e-05858882223
                 EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                 kC+   C  sF+++snL++H +  H
  Dca40952.1 858 KCNfeGCEHSFTTSSNLRQHVKAvH 882
                 79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031086.2E-8185224IPR004332Transposase, MuDR, plant
PfamPF105519.0E-19362457IPR018289MULE transposase domain
PfamPF044342.6E-6610645IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.891612646IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8621648IPR006564Zinc finger, PMZ-type
SuperFamilySSF576672.35E-6702734No hitNo description
Gene3DG3DSA:3.30.160.604.2E-10704734IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011708732IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868708737IPR007087Zinc finger, C2H2
PROSITE patternPS000280710732IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4735759IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0061737762IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159737766IPR007087Zinc finger, C2H2
PROSITE patternPS000280739762IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-8766798IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003774798IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367774803IPR007087Zinc finger, C2H2
PROSITE patternPS000280776798IPR007087Zinc finger, C2H2
SMARTSM0035545800825IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280802825IPR007087Zinc finger, C2H2
SMARTSM0035538828849IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.33E-8840895No hitNo description
PROSITE profilePS5015712.071857887IPR007087Zinc finger, C2H2
SMARTSM003559.1E-4857882IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-7858882IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280859882IPR007087Zinc finger, C2H2
SMARTSM003556.3888914IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280890914IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MCSCCTSIDW MRIGAFFLDS PAALLTEKLA CPRRIVKEQT IEQMLGSIGL CVITNVKTGI  60
WIADLQLVRC PVCGLNTCDG EQLSEMLATI YTYHRRFSTW LRPLIDSLKN VIGKLIDNIE  120
KYAKAVGDES DSDEAYTPSN NGSTDEEDGC TDLEIEDNTV LDTLDRIDDG YDPYKTTEWN  180
VEEEGFAAKL LDNDRRRYTA DCASIGCDWR IHASKLIDGT TWAIKSIRNP DHHGCAGLKG  240
HNPLANCEWV AKKLMEDIRS NSAITGERIQ EILMERYGLQ MATSSMYRMR ERALKLINGG  300
HDESYALLPC YCEMVKATNP GSYAFCSWTV LQTPEKPLQF KSIFVSFHAQ LKGLINGCKS  360
LIGVDGTHLK GNHGGVLLSA IVVDGNNEIF SVAVGVVEAE NKDNWCQFFW HLKHILSDSG  420
REDWTIISDR QKGIEPTLDQ IWPESGRRFC ARHLCKNFKK DYPGIVMHKL FWQLVNAYSE  480
FTFRKALKSL NRHGGEGCSK WFMDLGNQEL WARYKFDPRV SNEENTSNFV ESFNSTLGVH  540
RNNPVLSLLE GIRRLTMVRH ATRQQVAERW PDDGICPNIR ARLTKLRRES RLCQSFASSA  600
KSVYEVRDGR SYLLPVSLTN RTCKCGQWQI SGIPCRHAIS AIVAAKKDPE AFWNCVKVCE  660
ALDPNGRTPK CEEAYNVSTL DWTSIRMGDL LRSSVKRSLS HALLERPFVC PVDDCSASYR  720
RKDHLNRHLT QHEGKLFKCP VADCSKEFSV HGNIARHLKE YHERNPVQKE QKKHVCHIAG  780
CGKEFKYASQ LQKHEESHGR DCSVLCCMKA FANRECLSAH VRSCHQYIIC EVCESKHLRK  840
NYKRHLQSHD DSSTEVLKCN FEGCEHSFTT SSNLRQHVKA VHLNLRPFAC SVSGCGMRFA  900
FKHVRDNHEK SGRHVYAPGD LEEFDEQWRS RPHGGRKRKC PSVETLMRKR ITPPNECDSV  960
LNHSAEYLSW LLSADD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1930938RPHGGRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021749127.10.0uncharacterized protein LOC110714883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.17e-87transcription factor IIIA