PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41042.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 243aa    MW: 25962.8 Da    PI: 8.0678
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41042.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000177092123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC  C+k+Fs+   L  H  +H
  Dca41042.1 70 YKCAVCDKVFSSYQALGGHKTSH 92
                9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.75E-106892No hitNo description
Gene3DG3DSA:3.30.160.605.9E-46893IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-136994IPR007087Zinc finger, C2H2
SMARTSM003550.0217092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1387097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576676.75E-10122149No hitNo description
PfamPF139124.0E-12126151IPR007087Zinc finger, C2H2
SMARTSM003550.17127149IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85127163IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MATLEPMNPQ NRDDKTPYTA NSKKKRTRRP RSETTTTTPP SEEEYLALCL IMLARGDSGP  60
RDGGGEDKAY KCAVCDKVFS SYQALGGHKT SHRKPTTSTT STSTATIVVA PTTTVTTTAS  120
NGGGKAHVCL ICNKTFPTGQ ALGGHKRCHY EGTVSTTHTN NKLKAEPQNY GQNDHNSVVM  180
SDGGAATSTV TNTALEFDLN LPAMPDCASG GVDFDGVTTK LVAYDDQEVE SPHPSKKPRP  240
FSF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725368.12e-68zinc finger protein ZAT10-like
TrEMBLA0A0K9R2162e-54A0A0K9R216_SPIOL; Uncharacterized protein
STRINGXP_010687351.16e-65(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-40salt tolerance zinc finger