PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca41228.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 487aa MW: 53871.6 Da PI: 7.7234

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca41228.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.3e-11	347	406	5	64
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 +r++r NR +A rs +RK ++i eLe+kv++Le+e ++L ++ +l+ + +l ++++ Dca41228.1 347 RRAKRILANRQSAARSKERKMKYISELEQKVQTLESESTTLNTKVTSLQRDSTELANQNH 406 799***********************************************9999998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-17	343	407	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.53	345	408	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-10	347	404	No hit	No description
Pfam	PF00170	5.5E-10	347	405	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	347	403	No hit	No description
CDD	cd14703	2.05E-22	348	399	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MGDIERGNVD MMHRMQTTFN GSNQQFLSSN QCDVSQLNAS QIMPHLPQDT QILQNFSFDN 60 NNNNNNNNNN NNNNNNNNNN NGSNGIGILP LHLPVSPFSK IPVPRTTSHS RSLSQPPSFF 120 NGSLPPLFPP LFQNPSPTPN NNGGENMNNL NSNRLVKSSN RQSVLGRGNS IRITEGPPPR 180 KLHRRTVSEV PFGFNSIPAT APVNHNVESD AVVDEMLSSF INLDSIEALN SSVDSQGSGS 240 KTNGCDSSEN EAESCMNERG SAPVAAAARH NRSVSDSFMA NMSFVDESAQ RPPIPNTGVP 300 QVSLTEPAKL TSNLFSLGLG YRHFTADDMK KITSSEKLSE IASTDPRRAK RILANRQSAA 360 RSKERKMKYI SELEQKVQTL ESESTTLNTK VTSLQRDSTE LANQNHELKI RLRSLEQQSL 420 LQNSLNVALS SEAQRLRILT VQLSQNLLSH NFEQQLYIDP QTFQFQQQLL NQNMMQGMNN 480 NGSTQPN

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MGDIERGNVD MMHRMQTTFN GSNQQFLSSN QCDVSQLNAS QIMPHLPQDT QILQNFSFDN  60
NNNNNNNNNN NNNNNNNNNN NGSNGIGILP LHLPVSPFSK IPVPRTTSHS RSLSQPPSFF  120
NGSLPPLFPP LFQNPSPTPN NNGGENMNNL NSNRLVKSSN RQSVLGRGNS IRITEGPPPR  180
KLHRRTVSEV PFGFNSIPAT APVNHNVESD AVVDEMLSSF INLDSIEALN SSVDSQGSGS  240
KTNGCDSSEN EAESCMNERG SAPVAAAARH NRSVSDSFMA NMSFVDESAQ RPPIPNTGVP  300
QVSLTEPAKL TSNLFSLGLG YRHFTADDMK KITSSEKLSE IASTDPRRAK RILANRQSAA  360
RSKERKMKYI SELEQKVQTL ESESTTLNTK VTSLQRDSTE LANQNHELKI RLRSLEQQSL  420
LQNSLNVALS SEAQRLRILT VQLSQNLLSH NFEQQLYIDP QTFQFQQQLL NQNMMQGMNN  480
NGSTQPN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010665860.1	1e-131	PREDICTED: uncharacterized protein LOC104883107
TrEMBL	A0A0J8B671	1e-129	A0A0J8B671_BETVU; Uncharacterized protein
STRING	XP_010665860.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-59	bZIP family protein