PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41273.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 408aa    MW: 45682.6 Da    PI: 6.7857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41273.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-11121149331
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                 ++h+e+ErrRR+riN+ +++Lr+llP+ +
  Dca41273.1 121 KSHSEAERRRRERINNHLAKLRSLLPSTT 149
                 79************************963 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.455118179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8121148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8121148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.04E-7122149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF500223.83E-8151196IPR017941Rieske [2Fe-2S] iron-sulphur domain
Gene3DG3DSA:3.90.380.101.3E-22175284IPR015879Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain
SuperFamilySSF559616.2E-37210405No hitNo description
CDDcd088836.23E-99231408No hitNo description
PfamPF008482.3E-26233403IPR015879Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain
Gene3DG3DSA:3.90.380.101.5E-19296404IPR015879Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019439Biological Processaromatic compound catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016708Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor
GO:0046983Molecular Functionprotein dimerization activity
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MQQYQTHPFG GVTTTTYDNT RAGLVFQDFP TIQPPQQPPQ MAPWNLPQVN PYDPFMFPSS  60
SSYGGLFTKR PSSNSSSSLQ FAYDALGPMI QPGSVPFGLQ AELNKMTAQE IMDAKALAAS  120
KSHSEAERRR RERINNHLAK LRSLLPSTTK GWTYGLDGSL LKAPRITGLQ KFVPKEFGLV  180
PIKVATWGPF IVVNLAAPQE DVDADNMENE WLGSSSKLLS GNGVDSSLSY ICRREYTIEC  240
NWKVFCDNYL DGGYHVPYAH KSLASGLDLD SYTTQTFERV SIQRGASSST ENGDDFDRLG  300
SNVLYAFVYP NFMINRYGPW MDTNLVLPLG PRKCKVVFDY FLDGSLANDK AFIDRSLKDS  360
EQVQMEDIVL CEGVQRGLES PAYKYGRYAP NVEKAMHHFH CLLHRSLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERRRRE
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the first step of the osmoprotectant glycine betaine synthesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667953.11e-160PREDICTED: choline monooxygenase, chloroplastic isoform X4
SwissprotQ9SZR01e-126CHMO_ARATH; Choline monooxygenase, chloroplastic
TrEMBLA0A0K9QE031e-158A0A0K9QE03_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010667950.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-22bHLH family protein