PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca41372.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 930aa MW: 102646 Da PI: 8.2564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca41372.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.1e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Dca41372.1 87 FICEVCNKGFQREQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	13.1	0.00029	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Dca41372.1 163 FKCEKCSKRYAVQSDWKAHSKTC 185 89*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-5	86	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.98E-7	86	109	No hit	No description
Pfam	PF12171	4.9E-5	87	109	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	87	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	128	158	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.9E-5	151	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.98E-7	158	183	No hit	No description
SMART	SM00355	88	163	183	IPR015880	Zinc finger, C2H2-like
Pfam	PF14111	1.4E-18	708	784	IPR025558	Domain of unknown function DUF4283
Pfam	PF14392	5.8E-8	786	833	IPR025836	Zinc knuckle CX2CX4HX4C

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MATSSSSTSF FGSRDGTTII QPPPPPQEPP QLHLQNHHLS VAEAPPSSSS TPPQKKIKRN 60 LPGAPLKYPD ADVILLSPRS LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNK 120 EAVRKKVYLC PETTCVHHDA ARALGDLTGI KKHYFRKHGE KKFKCEKCSK RYAVQSDWKA 180 HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR LPTSLSTLGS HMFSTAGLTG 240 NNSIGLGMRL PHQMPNNNHL PSLSDHQMAS DILRLGGGSR QFDHLFTNSF QSQQQQQQQQ 300 QQQNIQSAQS NFYLSDGQSQ TDYHDQNNNQ LFHGQVNQMS NFQQESASTN PSFGNVRFYA 360 GNDNSTTDTN TMNSGSTGSG DHSSAILSPG AIGGLFGGPP QMSLSGGLSS LYRSCPSPHQ 420 QSAMSATALL QRAAKMGPTT STTNVNETAQ LKSFGAKTPP PPQQPSSPSG GGGGGGFRGL 480 YGEHDRNNLH DLLIRDLSRD NHLLMSSTTL FDHLQGNNNN NSLNYIGNEY INNYNYDGLN 540 SKNKSTKDGV TIALSDHQTR DFLGVGEIVR RSMNSGAGFT PRVEEQHHQC GHINNNMVPK 600 SPILLSSYVD AVLETTSVIT TKSAEGVQGV TTDVPIVVDD VATETVPVTE KKFGMSLFFC 660 EETAKLSEVN IEKEDIADEL ELWNRTLMGN ILGMRIQLQQ LKDYVYKAWN HVGNALLLKQ 720 WTPSFSQDLD HVSQVPVWVL LPALDPHFWS PVALSKIASK IGKPLYADQI TTTKARLGFA 780 RILVEIDVAE EVPEMVVVNT PFNERLTQTV EYEWIPYFCK TCKRLGHDTS KCKLNKPRME 840 YRPKVAETQE LPKPVEHTPP PGADVVDNLG FTAVKKGSVS RLKANASSMV LMNKFDQLQM 900 FETNTLEMVT GVGIQGSSGI DIPPVPPDKV

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MATSSSSTSF FGSRDGTTII QPPPPPQEPP QLHLQNHHLS VAEAPPSSSS TPPQKKIKRN  60
LPGAPLKYPD ADVILLSPRS LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNK  120
EAVRKKVYLC PETTCVHHDA ARALGDLTGI KKHYFRKHGE KKFKCEKCSK RYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR LPTSLSTLGS HMFSTAGLTG  240
NNSIGLGMRL PHQMPNNNHL PSLSDHQMAS DILRLGGGSR QFDHLFTNSF QSQQQQQQQQ  300
QQQNIQSAQS NFYLSDGQSQ TDYHDQNNNQ LFHGQVNQMS NFQQESASTN PSFGNVRFYA  360
GNDNSTTDTN TMNSGSTGSG DHSSAILSPG AIGGLFGGPP QMSLSGGLSS LYRSCPSPHQ  420
QSAMSATALL QRAAKMGPTT STTNVNETAQ LKSFGAKTPP PPQQPSSPSG GGGGGGFRGL  480
YGEHDRNNLH DLLIRDLSRD NHLLMSSTTL FDHLQGNNNN NSLNYIGNEY INNYNYDGLN  540
SKNKSTKDGV TIALSDHQTR DFLGVGEIVR RSMNSGAGFT PRVEEQHHQC GHINNNMVPK  600
SPILLSSYVD AVLETTSVIT TKSAEGVQGV TTDVPIVVDD VATETVPVTE KKFGMSLFFC  660
EETAKLSEVN IEKEDIADEL ELWNRTLMGN ILGMRIQLQQ LKDYVYKAWN HVGNALLLKQ  720
WTPSFSQDLD HVSQVPVWVL LPALDPHFWS PVALSKIASK IGKPLYADQI TTTKARLGFA  780
RILVEIDVAE EVPEMVVVNT PFNERLTQTV EYEWIPYFCK TCKRLGHDTS KCKLNKPRME  840
YRPKVAETQE LPKPVEHTPP PGADVVDNLG FTAVKKGSVS RLKANASSMV LMNKFDQLQM  900
FETNTLEMVT GVGIQGSSGI DIPPVPPDKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	159	226	3	69	Zinc finger protein JACKDAW
5b3h_F	3e-35	159	226	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	125	KLKQKNKEAVRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680044.1	1e-168	PREDICTED: protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A0K9RP19	1e-164	A0A0K9RP19_SPIOL; Uncharacterized protein
STRING	XP_010680044.1	1e-168	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-101	indeterminate(ID)-domain 5