PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41434.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 481aa    MW: 54170.4 Da    PI: 6.9866
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41434.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-182577456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                + +f++eq++ Le+ Fe++ ++  +++ +LAk+lgL+ rq+ +WFqN+Ra++k
  Dca41434.1 25 KKRFSDEQVRSLESIFENETKLEPKKKVQLAKELGLQPRQIAIWFQNKRARYK 77
                467************************************************99 PP
2HD-ZIP_I/II120.77.6e-3924115293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+r+s+eqv++LE+ Fe+e+kLep++Kv+la+eLglqprq+a+WFqn+RAR+k+kqlE+dy+ L+++y+al+++ + L+ke+++L ++l++
   Dca41434.1  24 NKKRFSDEQVRSLESIFENETKLEPKKKVQLAKELGLQPRQIAIWFQNKRARYKSKQLERDYNILRASYNALSSKYDCLKKEKQSLLTQLEN 115
                  69************************************************************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-17681IPR009057Homeodomain-like
PROSITE profilePS5007117.071979IPR001356Homeobox domain
SMARTSM003895.4E-162183IPR001356Homeobox domain
CDDcd000867.82E-162580No hitNo description
PfamPF000461.4E-152577IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-192686IPR009057Homeodomain-like
PRINTSPR000312.5E-55059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000312.5E-55975IPR000047Helix-turn-helix motif
PfamPF021832.1E-1579119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MYACISTSSN NSSNSKKGLK SMMNKKRFSD EQVRSLESIF ENETKLEPKK KVQLAKELGL  60
QPRQIAIWFQ NKRARYKSKQ LERDYNILRA SYNALSSKYD CLKKEKQSLL TQLENLKDIV  120
EKSKGEKQIG NDQSEVTNSQ ESQSKIDKIE KNKNDIKSDQ SDNRIKPTLS LEGSEYGASM  180
LSSDEGSSEN NNYFGMDEDT TDLLTMVQPI VDHHPNTLTS PHGWDNLYDD DQPLDNSHCV  240
VHNAAFFGGF LLFSAVVAAV VGWNVVSFRR KTVLFRFMHC FPQFDLCFAG HGQLVKITGP  300
VSCGNVSLES SYERVSKCVY TSTLLHEYHG FKLKVLDSNV PSFLWRLAYL ERLSTDFYIS  360
DENSGIQALV KAGGGSRVVP LIIETRLVNT TRDGILSPSL TKWLTERDLS AESRLIRLEE  420
SYIKEGDRIS VIGVLQKGDN IVTITQPPEL ISTGCLWQKL LAPVDFNGLI IGLPTADFSD  480
R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-42homeobox 12