PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca41709.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 317aa MW: 34955.5 Da PI: 9.3669

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca41709.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.3	3.7e-13	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE++ l+d+++++G g Wk+I + + +Rt ++k++w++ Dca41709.1 5 KQKWTAEEEQALKDGIAKHGIGKWKLIQKDPQfhlhlSNRTNIDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.075	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.6E-17	2	58	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-9	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-15	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-9	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.23E-21	6	56	No hit	No description
SMART	SM00526	2.4E-7	113	220	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	16.642	155	225	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	2.67E-11	157	233	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.4E-10	158	229	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.1E-6	159	217	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGNPKQKWTA EEEQALKDGI AKHGIGKWKL IQKDPQFHLH LSNRTNIDLK DKWRNMSTAA 60 IQGTSTRIRN PKPKLVLDAP IAAIAPPLPL PLPLPPSPPP PTLALPPPPP PPPPPAPSVD 120 MQTPPVHSVA PEPPINLVKE EPAKDIPDAK IGARNPNDTT EMIFEALSRA NEKNGLDISS 180 MISYIEQKVT TETPQNFRKQ LGARLRRLVL QGRLEKIDNC FRLKKSPLEE ANAMIRKDVL 240 PKLPIVPART RISESLEEAA KTAAYKVAEA EEKTYIAALS VKEAEKLSKM QEEADAILKV 300 AQEICDRCHS NDALLVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696540.1	2e-98	PREDICTED: telomere repeat-binding factor 4
STRING	XP_010696540.1	7e-98	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	3e-24	MYB_related family protein