PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41798.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 300aa    MW: 34288.8 Da    PI: 6.7706
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41798.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-22953145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                kr e++snrqvt+skRr+gi+KKA+EL +LCd+ + +++fs+tgk
  Dca41798.1  9 KRLESSSNRQVTYSKRRTGIIKKAKELAILCDIHIILLMFSPTGK 53
                689****************************************98 PP
2K-box14.91.1e-06881174776
       K-box  47 slkeLqqLeqqLekslkkiRskKnellleq 76 
                 ++++Lqq+e+ L +sl++iR +K+++ + q
  Dca41798.1  88 NVEHLQQMEDSLTESLNQIRLQKENISKHQ 117
                 6899*******************9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.852161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-25284IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-19323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-201155IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRVKLKIKR LESSSNRQVT YSKRRTGIIK KAKELAILCD IHIILLMFSP TGKPTLYLGD  60
RSTLEQVITK FAQLTPQERT KRPDKIDNVE HLQQMEDSLT ESLNQIRLQK ENISKHQYMS  120
SLDCSNQFQN GMHFPLMVTS MQESQQLSWL PNNDNQQMIL PDDSNFFPQR DMKCGSDASL  180
SGYPGYYANA KTDIDNARQQ CDNTRPDCAT LNELTATTCM GVQIGEQYPY SPYGNISLPE  240
EKKTITDNTL NFPNNPMDYQ IPGHFDLSRS IYDTRPQPWV PAALPCPIPM FHDNSFPQPN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733860.11e-157agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_021733861.11e-157agamous-like MADS-box protein AGL65 isoform X2
TrEMBLA0A0K9R7471e-150A0A0K9R747_SPIOL; Uncharacterized protein
STRINGXP_010678493.11e-151(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-52AGAMOUS-like 65