PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca41801.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 358aa MW: 40908.4 Da PI: 4.9752

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca41801.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.6	5.7e-54	19	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL++k+ + + + ++i evd++k+ePw+Lp+ +k +ek+wyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++l Dca41801.1 19 LPPGFRFHPTDEELITNYLQPKALDIGFVA-RAIGEVDLNKCEPWELPRLAKLREKQWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR-DKTL 115 79***********************999.89***********8888899************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfykgrapkgekt+Wv+heyrl Dca41801.1 116 IGMKKTLVFYKGRAPKGEKTNWVIHEYRL 144 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-63	16	170	IPR003441	NAC domain
PROSITE profile	PS51005	58	19	169	IPR003441	NAC domain
Pfam	PF02365	2.7E-28	20	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MENMEVVHVG GDEEEAMDLP PGFRFHPTDE ELITNYLQPK ALDIGFVARA IGEVDLNKCE 60 PWELPRLAKL REKQWYFFCV RDRKYPTGLR TNRATEAGYW KATGKDKEIF RDKTLIGMKK 120 TLVFYKGRAP KGEKTNWVIH EYRLDGPSSL QNLPSNSKNE WTICRVFHKN EEGKKFPFPG 180 CTRQESYETE YNPSGILPPL MESSPYNAAA TTTNNNNDND VLRVSCFSNP MDTSTSSSQN 240 CHFYDINQSY YDGFISNPIE SILNYHNDDY LQPQRGQFQG SYAMSEQYVL RDILENRVTE 300 TKERIKTEDV NHSASQSTGL NSDIHAEDSS IVSNYDIARP PFDDCGGPST SAGPLNYY

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MENMEVVHVG GDEEEAMDLP PGFRFHPTDE ELITNYLQPK ALDIGFVARA IGEVDLNKCE  60
PWELPRLAKL REKQWYFFCV RDRKYPTGLR TNRATEAGYW KATGKDKEIF RDKTLIGMKK  120
TLVFYKGRAP KGEKTNWVIH EYRLDGPSSL QNLPSNSKNE WTICRVFHKN EEGKKFPFPG  180
CTRQESYETE YNPSGILPPL MESSPYNAAA TTTNNNNDND VLRVSCFSNP MDTSTSSSQN  240
CHFYDINQSY YDGFISNPIE SILNYHNDDY LQPQRGQFQG SYAMSEQYVL RDILENRVTE  300
TKERIKTEDV NHSASQSTGL NSDIHAEDSS IVSNYDIARP PFDDCGGPST SAGPLNYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-53	8	175	3	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-53	8	175	3	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-53	8	175	3	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-53	8	175	3	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-53	8	175	3	171	NAC domain-containing protein 19
4dul_B	9e-53	8	175	3	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021761600.1	1e-162	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-115	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2I7ZAS9	1e-151	A0A2I7ZAS9_SESPO; NAC domain protein 6
STRING	XP_010678483.1	1e-156	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-115	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]