PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41817.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 87aa    MW: 10347.9 Da    PI: 10.3583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41817.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-18145448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT eEd ll ++++++G g+W++++ + g++R++k+c++rw +yl
       Dca41817.1  1 WTDEEDNLLRNCIEKHGEGNWHRVPIRAGLNRCRKSCRLRWMNYL 45
                     *******************************************97 PP
2Myb_DNA-binding33.87.6e-115187139
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                     rg + ++E +l+++++k+lG++ W++Ia +++ gRt+++
       Dca41817.1 51 RGQFNEDEVDLIIRLHKLLGNR-WSLIAGRIP-GRTAND 87
                     899*******************.*********.****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.0E-11147IPR001005SANT/Myb domain
CDDcd001672.47E-11145No hitNo description
PfamPF002491.9E-16145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-22152IPR009057Homeodomain-like
SuperFamilySSF466892.37E-25186IPR009057Homeodomain-like
PROSITE profilePS5129425.993149IPR017930Myb domain
SMARTSM007171.15087IPR001005SANT/Myb domain
PROSITE profilePS5129414.5655087IPR017930Myb domain
PfamPF002491.3E-95187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-165387IPR009057Homeodomain-like
CDDcd001678.95E-65487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
WTDEEDNLLR NCIEKHGEGN WHRVPIRAGL NRCRKSCRLR WMNYLKPNIK RGQFNEDEVD  60
LIIRLHKLLG NRWSLIAGRI PGRTAND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-161861094B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021811965.16e-50LOW QUALITY PROTEIN: transcription factor MYB114-like
SwissprotQ9FNV95e-47MY113_ARATH; Transcription factor MYB113
TrEMBLA0A142D8G24e-50A0A142D8G2_9CARY; Myb transcription factor 6
STRINGEMJ177293e-49(Prunus persica)
STRINGXP_010034461.13e-49(Eucalyptus grandis)
STRINGXP_010062250.15e-49(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-49myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]