PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41960.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 496aa    MW: 56776.2 Da    PI: 5.7646
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41960.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-13371171699
                 EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++lp+ f+++++g+ ++    +le   + + W+v  +++ + g+++l  GW+eFv+++ L++gD+++F+ ++ +   l vk+f+k
  Dca41960.1  37 VTLPRAFIKHFNGDIPQW--FILEIaGTRKGWRVDTKVNTN-GGFFLDYGWSEFVEDQSLQVGDILLFECEE-DPLILQVKIFDK 117
                 689*****8887775554..44444245689****954444.5699***********************654.788899999987 PP
2B350.53.7e-16226313190
                 EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 f k l+ +dv  +  + +lp+  +++ +++  ++ t++l+d++gr+W vkl  rk++ + + l++GWkeF  +n++k+gD+++F++++++  
  Dca41960.1 226 FSKGLMEEDVKGLkLNKTLPRISVARTKLS--GDETVVLKDQDGRTWPVKL--RKRPAGrVDLAQGWKEFLIENNIKSGDILTFEFISDNVI 313
                 556677777766622359999999999777..6679***************..6665555*************************9876544 PP
3B348.91.1e-15388472896
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 +++lk++ l +p++ a++ ++++  + t++++d++ ++W++k++ r ++gr+ ltkGW  F k +++ +gD++v ++++++   ++v +
  Dca41960.1 388 KHSLKTSYLHIPRPIARKQKLEN--NDTMIIQDPEAKQWRMKIRTRPSDGRVALTKGWDTFWKRHKISSGDTLVCEFVSDH--IMKVNI 472
                 57788899***********8884..459**********************************************9987643..335555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.54722118IPR003340B3 DNA binding domain
SMARTSM010190.002131118IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-1435119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-1536119IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-1037117IPR003340B3 DNA binding domain
CDDcd100171.59E-1138116No hitNo description
Gene3DG3DSA:2.40.330.106.9E-18225320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-16225320IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-13226319No hitNo description
SMARTSM010199.4E-9226323IPR003340B3 DNA binding domain
PROSITE profilePS5086314.071227321IPR003340B3 DNA binding domain
PfamPF023621.3E-13241311IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-18381474IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-18381475IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111381476IPR003340B3 DNA binding domain
SMARTSM010193.2E-12383476IPR003340B3 DNA binding domain
PfamPF023627.3E-13388470IPR003340B3 DNA binding domain
CDDcd100179.24E-10389474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MIVFQQFCCL NRGSLGLAAK IKLPVTIGHR FDSPSPVTLP RAFIKHFNGD IPQWFILEIA  60
GTRKGWRVDT KVNTNGGFFL DYGWSEFVED QSLQVGDILL FECEEDPLIL QVKIFDKDGS  120
EKSAATNLES GRNVDEIPKA HCVNEDGIWS TRPSTYDDRH KTFQDDIDQI QMETATCDDG  180
HEQFHEDIDG IEMEADCDYG IHEKQHQKDV NGMHVKSEYT RSDLKFSKGL MEEDVKGLKL  240
NKTLPRISVA RTKLSGDETV VLKDQDGRTW PVKLRKRPAG RVDLAQGWKE FLIENNIKSG  300
DILTFEFISD NVINIHIERS SRNDVPPEMA TKSEPMDSFD ENLDLCEEPV VNYTTANHNA  360
PETETTKLKT ERVFFDNFMP SSFSVTWKHS LKTSYLHIPR PIARKQKLEN NDTMIIQDPE  420
AKQWRMKIRT RPSDGRVALT KGWDTFWKRH KISSGDTLVC EFVSDHIMKV NIVRLSPSYA  480
SCGVEPAMKR DVMQLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-14B3 family protein