PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41961.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 335aa    MW: 38149.4 Da    PI: 9.503
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41961.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-14481301199
                 HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   s++l +p +f++ + g ++++ + ++  d + + W+v++     +++++l++GW eFv a++Lk+gDf++F+++++s f  +vkv+++
  Dca41961.1  48 DFSQQLKIPDDFVSVFnGRVPHR-F-IIESDMTKECWRVEV---EEDEGVYLREGWVEFVVAHHLKVGDFLLFEYEEQSIF--LVKVYNR 130
                 567889*******8875555444.2.4436688899*****...6667899************************988888..9988765 PP
2B3444.1e-142262991693
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 l++p    ++  + +++   +tle+  g +W vkl+  kk+gr++lt+GWkeF ++n + +gD++ F+++ ++  + +
  Dca41961.1 226 LTVPLAISKAK-LAHKR--GVTLENAIGDRWPVKLS-HKKDGRVTLTRGWKEFLSDNLVAAGDSLRFEFITDDVLKVL 299
                 55555554333.33334..4***************5.777789*************************9986666443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.67538131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1838133IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-1141131IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-1847135IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-1347129No hitNo description
PfamPF023626.1E-1250130IPR003340B3 DNA binding domain
CDDcd100179.16E-11210302No hitNo description
Gene3DG3DSA:2.40.330.102.0E-16210304IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-7211304IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901211304IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-14213303IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-12224296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEPPPPPPFS NASSKRILRS NNVAKQVERT KPPKNSRKAS FIRLLGVDFS QQLKIPDDFV  60
SVFNGRVPHR FIIESDMTKE CWRVEVEEDE GVYLREGWVE FVVAHHLKVG DFLLFEYEEQ  120
SIFLVKVYNR DGCQKTVVSA QGDKNNPLKI NDLEEQDDSE PFESPTKIRR TDRSCKKQRK  180
RPFTGGKTQQ TTPRKNARVA TESLTEHSMS FSVKIDKHMS YQFKQLTVPL AISKAKLAHK  240
RGVTLENAIG DRWPVKLSHK KDGRVTLTRG WKEFLSDNLV AAGDSLRFEF ITDDVLKVLV  300
TKASQVERKS EEPNSPDGAT AAMPSMDDCK YSAMC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-14B3 family protein