PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41962.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 280aa    MW: 31554.2 Da    PI: 6.3546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41962.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.3e-13771561799
                 E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +lp+ f+++++g+ ++    +le   + + W+v  +++ + g+++l  GW+eFv+++ L++gD+++F+ ++ +   l vk+f+k
  Dca41962.1  77 TLPRAFIKHFNGDIPQW--FILEIaGTRKGWRVDTKVNTN-GGFFLDYGWSEFVEDQSLQVGDILLFECEE-DPLILQVKIFEK 156
                 89*****8887775554..44444245689****954444.5699***********************654.777789999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00970157IPR003340B3 DNA binding domain
CDDcd100175.60E-1277154No hitNo description
PfamPF023626.8E-1177156IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-1577158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-1377157IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.30778157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKLQAAARGP QVAAREPQAG GKGAAGGRAV PGKKITHWGG RRTTVHWGGR RMTVQWVDGL  60
DGGCRSRRRK EGEVLRTLPR AFIKHFNGDI PQWFILEIAG TRKGWRVDTK VNTNGGFFLD  120
YGWSEFVEDQ SLQVGDILLF ECEEDPLILQ VKIFEKDGSE KSAATNLESG RNAGEIPKAH  180
CVNEDNIWST RPSTCDDDGH EQFHEDIDGI EMEADCDYGI HEKQHQKDVN GMHVKSDDLC  240
RVHEKRLKIF ERTDRGRGKG FETEQDIAKD ISGENEALWR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-06VERDANDI