PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42108.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 240aa    MW: 25673.6 Da    PI: 8.0112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42108.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000177193123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC  C+k+Fs+   L  H  +H
  Dca42108.1 71 YKCAVCDKVFSSYQALGGHKTSH 93
                9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-46994IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.77E-1069146No hitNo description
PfamPF139122.4E-137095IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1387198IPR007087Zinc finger, C2H2
SMARTSM003550.0217193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
PfamPF139123.6E-11123148IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099124160IPR007087Zinc finger, C2H2
SMARTSM003550.34124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MATLEPMNPQ NRDDKTPYTA NSKKKRTRRP RSETTTTTTP PSEEEYLALC LIMLARGDSG  60
PRDGAAEDKA YKCAVCDKVF SSYQALGGHK TSHRKPTTST ATTTVVAPTT TVTTTASNGG  120
GKAHVCLICN KTFATGQALG GHKRCHYEGT VSTTHTNNKL KAEPQNCGQN DHNSVVMSDG  180
GAATSTVTNT ALEFDLNLPA MPDCVSGGVD FDGVTTKLVV YDDQEVESPH PSKKPRPFSF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725368.12e-67zinc finger protein ZAT10-like
TrEMBLA0A0K9R2161e-53A0A0K9R216_SPIOL; Uncharacterized protein
STRINGXP_010687351.18e-65(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-41salt tolerance zinc finger