PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42192.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 691aa    MW: 75835.1 Da    PI: 7.0688
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42192.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1262.9e-0832109488
        FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                 +++A + GF v+++ksk++         ++ C + g+++++++ + k++r+ +++ ++C  ++  kk+ d++w+++  + eHnHe
  Dca42192.1  32 RDFAVKHGFMVTIKKSKRE------SYFDLGCDRGGTTRRRTTGEPKRKRKVPSKLINCPFHVIGKKD-DDVWVLQIKNVEHNHE 109
                 5799**********99888......5688*************99888999999999****99877777.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-632109IPR004330FAR1 DNA binding domain
SuperFamilySSF537201.13E-50168429IPR016161Aldehyde/histidinol dehydrogenase
Gene3DG3DSA:3.40.605.103.6E-54215396IPR016162Aldehyde dehydrogenase N-terminal domain
PfamPF001719.2E-48216427IPR015590Aldehyde dehydrogenase domain
Gene3DG3DSA:3.40.309.102.3E-6397429IPR016163Aldehyde dehydrogenase, C-terminal
SuperFamilySSF752178.5E-31516674IPR029028Alpha/beta knot methyltransferases
Gene3DG3DSA:3.40.1280.101.4E-40522675IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminal
PfamPF005881.2E-28525672IPR001537tRNA/rRNA methyltransferase, SpoU type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0003723Molecular FunctionRNA binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDSETNNVRK IARLPPPPGT FNDREEVIAY VRDFAVKHGF MVTIKKSKRE SYFDLGCDRG  60
GTTRRRTTGE PKRKRKVPSK LINCPFHVIG KKDDDVWVLQ IKNVEHNHEP LEDMSEHPYN  120
RRFSEDEVRQ IKEMIDAGIK PREVLETLKR SNPELKSTPK QLYNLKNKIT QGKFSETSFK  180
TWKPTNKISL QKVSNFIGGK FVNSEGNVCA DVVNPDKLAS VISTEQGETI KRAHASIIRG  240
LEVVEKACWN RALQIGELVP NASTGVDMYS IREPLGVCAG ICQCNYPAVA PLWMFPISII  300
CGNTFVLNPS VKSPGASLKL VELAKEAGLP DGVLNVIHGG NDIVDHICGD DDIKAISFTG  360
SYTTASHIYA QAAARGKLVE ASIRCKNQAV VMPDACMDTT LDALIAAGFG AAGDPCTSVR  420
SVIFVGSAAP WEIHEFHVLK RDHQSEIECL ILLENGEVPE GLGEIPGDRV YVSSLVMKRL  480
AGVQSTESIE AIALVRSPRS FLDLNDDQLK MDCTKWFGSA STHRILVLEG IQDPGNLGTL  540
LRSALAFKWN GVFLLPGCCD PFNEKAIRAS RGAPFQLPLV SGKWSHVEAF INEVKVKLMA  600
GHPDASDDVK LVHKLSHGFA NSLADVPLCL VLGSEGSGLS EKAREFCELV SIPMAGNFES  660
LNVAVAGGIF MFMLQSDISD DILVDRRRNL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zz7_A6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_B6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_C6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_D6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_E6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_F6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_G6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_H6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_I6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_J6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_K6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
4zz7_L6e-5315242927296Methylmalonate-semialdehyde dehydrogenase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076PKRKRKV
2145150ETLKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838775.10.0methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like isoform X2
TrEMBLA0A0K9R1F90.0A0A0K9R1F9_SPIOL; Uncharacterized protein
STRINGEOX918991e-174(Theobroma cacao)