PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca42208.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 600aa MW: 69549.8 Da PI: 6.9178

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca42208.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.8	6.2e-17	51	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA ++GF++r+ +++k ++g+ +++ vC++egk +++kk+ ++ +r+ ++ +gCka++++ +g ++++k+++eH+Hel+ Dca42208.1 51 DFYKIYALSIGFDIRRYSEHKW-HDGTLKTKLIVCNREGKYKSKKKTecvdnsGDNVQRRGKVLAVGCKARIRLFCL-NGLFKIDKFVEEHSHELV 144 6**************99998.8888************9999999987666677888999*****999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-13	51	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-29	266	358	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MVEMQIVPAE SGAIDATSLN GMDESYLCET VKEDFKPFVG LEFVSVDEAA DFYKIYALSI 60 GFDIRRYSEH KWHDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR 120 IRLFCLNGLF KIDKFVEEHS HELVSAEDRE FQKLSTSLTE YHKAFILSNI RLNIGDTKTY 180 RMIKEHVNGF ENIGATLNQF RNFQRDMKCF IHERDGQLLI DRFKSMEENV PDFFFDYDVD 240 EDGSLRRVIW ADGVGRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFSGAL 300 IAKEDFESFN WVFSKFLSCM GGKEPEYIIT DQDPGIIKSV SHMFKHCRHR YCTWHIMSKV 360 SIKYGATRND CKDFLAKLNS IIWDEEIEPT EFDSRWVQIM EEYGVGKGDW FEDSFSIRRQ 420 WVQSHCKDLR MGSLLRTTQR SESSNSFFKK FEHKTGTLVE FWMRFESAIE QQRHNKKRLD 480 NGDKHYTEKL ITHLKIEEDA SKVHTAEIFE DFQKEVKYSV STCRCKGYLE DNDVQVTLVE 540 DSIRERVFEV QFHPEERLAL KPRAARSSGA ARSPGWSGSL FPALTPETLA VATASKKNAV

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MVEMQIVPAE SGAIDATSLN GMDESYLCET VKEDFKPFVG LEFVSVDEAA DFYKIYALSI  60
GFDIRRYSEH KWHDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR  120
IRLFCLNGLF KIDKFVEEHS HELVSAEDRE FQKLSTSLTE YHKAFILSNI RLNIGDTKTY  180
RMIKEHVNGF ENIGATLNQF RNFQRDMKCF IHERDGQLLI DRFKSMEENV PDFFFDYDVD  240
EDGSLRRVIW ADGVGRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFSGAL  300
IAKEDFESFN WVFSKFLSCM GGKEPEYIIT DQDPGIIKSV SHMFKHCRHR YCTWHIMSKV  360
SIKYGATRND CKDFLAKLNS IIWDEEIEPT EFDSRWVQIM EEYGVGKGDW FEDSFSIRRQ  420
WVQSHCKDLR MGSLLRTTQR SESSNSFFKK FEHKTGTLVE FWMRFESAIE QQRHNKKRLD  480
NGDKHYTEKL ITHLKIEEDA SKVHTAEIFE DFQKEVKYSV STCRCKGYLE DNDVQVTLVE  540
DSIRERVFEV QFHPEERLAL KPRAARSSGA ARSPGWSGSL FPALTPETLA VATASKKNAV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-62	FAR1-related sequence 5