PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42273.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 571aa    MW: 62368.9 Da    PI: 7.0043
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42273.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.6e-32227284260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  Dca42273.1 227 EDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSP-DGQITEIIYKGTHDHPK 284
                 7****************************************.***************85 PP
2WRKY106.51.3e-33400458159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct++gCpv+k+ver+++dpk+v++tYeg+Hnhe
  Dca42273.1 400 LDDGYRWRKYGQKVVRGNPNPRSYYKCTYTGCPVRKHVERASHDPKAVITTYEGKHNHE 458
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-27218285IPR003657WRKY domain
SuperFamilySSF1182906.54E-25221285IPR003657WRKY domain
PROSITE profilePS5081122.355221285IPR003657WRKY domain
SMARTSM007747.5E-34226284IPR003657WRKY domain
PfamPF031062.2E-24227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37385460IPR003657WRKY domain
SuperFamilySSF1182901.57E-29392460IPR003657WRKY domain
PROSITE profilePS5081138.021395460IPR003657WRKY domain
SMARTSM007742.8E-39400459IPR003657WRKY domain
PfamPF031063.4E-26401458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MHHRPPPSSA SDPPPSTADH SSSATTNARY KLMSPAKLPI TRSPCLTIPP GLSPTSFLES  60
PVLLSNFKGE PSPTTGSFFK FQMMHSSSAD SSTLHPAVNS STGVELSQSS SFEFKPNAGS  120
FSMPGFSFSG SLASSTNVNQ QQQQIGQAIQ SQVERQSQSS EPSVAVKSEV TLADDRKAIV  180
ASSGSGILPD AELNEFSHKA DCSNQAQASQ CEQRALGSQV ITERTSEDGY NWRKYGQKLV  240
KGSEFPRSYY KCTHPNCEVK KLFERSPDGQ ITEIIYKGTH DHPKPQPNRR PSVGSMLPTL  300
EEKSDRYPLT EQDGNLGDSY CQTTPNNEQC STPDLSPCGG NDNTEDVIPY ANHTPDDADE  360
DDPFAKRRRM EIGELDITSV VKPIREPRVV VQTVSEVDIL DDGYRWRKYG QKVVRGNPNP  420
RSYYKCTYTG CPVRKHVERA SHDPKAVITT YEGKHNHEVP TARNSNNDSA SRIGPHDGGN  480
PVSLGLGVGL RPGSDFVHGM GVGHGQGQYN GRNMLMLQSG QFSTFPGYVN GGMALYGSRE  540
NRNQGQSIEN QPVNHSVNPY QQNMGRILMG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35227460877Probable WRKY transcription factor 4
2lex_A1e-35227460877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675876.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-160WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2I7ZAQ00.0A0A2I7ZAQ0_SESPO; WRKY DNA-binding protein 25
STRINGXP_010675876.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-129WRKY family protein