PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42443.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 147aa    MW: 17463.8 Da    PI: 6.6843
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42443.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-09901242155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yp++ ++  LA+ +gL++rq+ +WF N+R ++
  Dca42443.1  90 KWPYPTEGDKIALAEMTGLDQRQINNWFINQRKRH 124
                 569*****************************985 PP
2ELK35.12.9e-124465122
         ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                +LK+qLlrK++++++sLk EFs
  Dca42443.1 44 DLKDQLLRKFGSHISSLKLEFS 65
                6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037892.6E-94465IPR005539ELK domain
SMARTSM011884.2E-64465IPR005539ELK domain
PROSITE profilePS512139.9354464IPR005539ELK domain
PROSITE profilePS5007112.55264127IPR001356Homeobox domain
SuperFamilySSF466892.1E-2065139IPR009057Homeodomain-like
SMARTSM003892.1E-1266131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2869128IPR009057Homeodomain-like
CDDcd000861.53E-1173128No hitNo description
PfamPF059202.7E-1884123IPR008422Homeobox KN domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MFISFKPHVI YFMFAEEAAA SSDEECSGGE VDVHDMQPKD EERDLKDQLL RKFGSHISSL  60
KLEFSKKKKK GKLPREARQM LFEWWNAHYK WPYPTEGDKI ALAEMTGLDQ RQINNWFINQ  120
RKRHWKPSEN MQFALMDNIS GQYFPDD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021727071.12e-78homeobox protein knotted-1-like 6 isoform X2
SwissprotQ84JS61e-60KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A0K9RP312e-76A0A0K9RP31_SPIOL; Uncharacterized protein
STRINGXP_010695813.15e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-51KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]