PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42455.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 418aa    MW: 46421.4 Da    PI: 8.4521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42455.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11356400654
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +++Er RR +i +++ +L++l+P+     +k  + +++L +Av+YIk+L
  Dca42455.1 356 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTSDMLDLAVNYIKDL 400
                 689*********************7....688***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.824350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-15353408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.66E-11354405No hitNo description
Gene3DG3DSA:4.10.280.102.9E-14355411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-8356400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDSEFQQQKY QHHFQDLQKE FQHQKQQVNS LTRFRSAPSS YFASFLDAAD TITSPGGGAS  60
GGDKGDLSNT KGEFFNARPL SPETESIFAR FMSSMGEGSN SSQKLCEIPE NSQMQPDYMV  120
MAKEEQGICN ISSQMMYQNS SKPPLVNRHS SSSGVGSVTI NSTSDMKVGL GGRSSNGTSS  180
LTRHSSSPAG FFDSLNIDGY GVLRGVDDYG GGHTDKNQMN YSSGQTSTTS GPVRQKSQIE  240
EKIMRMNSLE EMKFSNSQNN DGTYTNGVPT SSWDDSILSE SFSSIHEPDD GRQLYTEQNS  300
TDNQIGKHKT RRPLAHQLSL PNTSAEFSAM ENLLNFQNDV PLRIRAKRGC ATHPRSIAER  360
VRRTKISERM RKLQDLVPNM DKQTNTSDML DLAVNYIKDL RKQVKTLNGN RKKCTCAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772031.11e-150transcription factor bHLH130-like
TrEMBLA0A0K9S2431e-116A0A0K9S243_SPIOL; Uncharacterized protein
STRINGXP_010673593.11e-135(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-60bHLH family protein