PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42492.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 292aa    MW: 33469.3 Da    PI: 9.0905
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42492.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.73.2e-07781492190
        FAR1  21 kskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +sk+ g+   ++ +C k gk +    +  +++ r+++++++++C   lk+   k+ k+ v+ ++  HnH+l 
  Dca42492.1  78 SSKHRGNKEYHKITCDKGGKYKGPFVDpeRVSLRKNTTTKKCDCLFALKIVSGKNRKFAVIPMHGFHNHPLL 149
                 3456677789999******99987666556788999999999999999999999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-578149IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSFTGDGEDD YGEDFGCDEV FDDNGLANDS FTVEKLVGDG INYSPHFVNT LFFDTWVKAY  60
KCAKSIAHGL CIALVKASSK HRGNKEYHKI TCDKGGKYKG PFVDPERVSL RKNTTTKKCD  120
CLFALKIVSG KNRKFAVIPM HGFHNHPLLK NFNGQRQMTF MLDEQKDFVR VNVNAEIRTT  180
NIRRGFQEKY LNQPQPNKRQ FDTVVAKVRL KEMGSRNHVD NMIHLAKING YCYFYEKDAT  240
DEKLSRVMMA HPVALKMLKS YFYVIGIDST YNTNSYDFPV VEIMGLLLGN RF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-