PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4257.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 508aa    MW: 56671.9 Da    PI: 7.9284
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4257.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31201258260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +Dgy+WrKYGqK+vkgse+prsYY+C++++Cp+kkkvers+ +++v+ei+Y+g+Hnh+k
  Dca4257.1 201 EDGYCWRKYGQKQVKGSENPRSYYKCSYPNCPTKKKVERSR-EGHVTEIVYKGSHNHPK 258
                8****************************************.***************85 PP
2WRKY1062e-33357415159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k++er+++d ++v++tYeg+Hnh+
  Dca4257.1 357 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHIERASHDMRAVITTYEGKHNHD 415
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-27192259IPR003657WRKY domain
PROSITE profilePS5081123.02195259IPR003657WRKY domain
SuperFamilySSF1182906.28E-24198259IPR003657WRKY domain
SMARTSM007742.1E-33200258IPR003657WRKY domain
PfamPF031061.4E-23201257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37342417IPR003657WRKY domain
SuperFamilySSF1182905.36E-29349417IPR003657WRKY domain
PROSITE profilePS5081138.744352417IPR003657WRKY domain
SMARTSM007741.3E-38357416IPR003657WRKY domain
PfamPF031061.4E-25358415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MTSPFTDFFA SNNNNNNNNN DDNNNGIERS NSISSWGGFN ELVEAPKFKS YAPSSISVSK  60
PNSFATTGPN SFSPSIFLDS PLLNVQNFPS PTVGAFGGEN FNWGASNNND THKVVKDEAK  120
NINNNNFTFH APNITTDGWK LSESKSQNDK INNDNSSSQS GYNSNQVIPW EMSSQKSDDN  180
VQRSYSSQPA VPMNRAQKRA EDGYCWRKYG QKQVKGSENP RSYYKCSYPN CPTKKKVERS  240
REGHVTEIVY KGSHNHPKPQ PGKKTSDVVS NTLVVHGMTE NNNSTFTPET SSVSMDDDEE  300
FDQINSAISV TRKDDEIEPQ PKRWKGENEA EVMSGYGGRT VKEPRVIVQT TSEIDILDDG  360
YRWRKYGQKV VKGNPNPRSY YKCTSAGCPV RKHIERASHD MRAVITTYEG KHNHDVPAAR  420
GSSGYNNVPV PVRPLSAVPN QTNHFNSYKP FNNNTTNGIK PETQSQSQSP FTLQMLQSPG  480
SFGFSGFGNQ NEAKEEPMDN KFLDTYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37201418878Probable WRKY transcription factor 4
2lex_A3e-37201418878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106270.10.0PREDICTED: probable WRKY transcription factor 33
TrEMBLA0A0K9Q8X60.0A0A0K9Q8X6_SPIOL; Uncharacterized protein
STRINGXP_010683807.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-109WRKY DNA-binding protein 33