PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42608.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 868aa    MW: 94316.2 Da    PI: 5.6382
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42608.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.6e-20170225156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q+++Le++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Dca42608.1 170 KKRYHRHTPQQIQQLESVFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 225
                 688999***********************************************999 PP
2START202.91.3e-633826071206
                 HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 ela+ a++el+k+a+ +ep+W +       e++n de++++f +  +     + +ea+r++gvv+ ++  lve+l+d++ +W+e+++    +a+t++vi
  Dca42608.1 382 ELALGAMDELLKMAQTDEPVWLRNIdsggrEILNHDEYRRSFNPCIGmkpngFVSEASRETGVVIINSLALVETLMDVN-RWTEMFPgmvaRASTTDVI 479
                 57899*******************999***************99888999*9***************************.******************* PP

                 CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 ssg      galqlm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+d  ++ + s+ ++ +++lpSg+++++++ng+skvtwveh++++++++
  Dca42608.1 480 SSGmggsrnGALQLMHAELQVLSPLVPvRVVNFLRFCKQHADGVWAVVDVSIDCIRETSGSPTFANCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDNSI 578
                 *********************************************************999*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h+l+++l++ g+ +ga++wvatlqrqce+
  Dca42608.1 579 HQLYKPLIGAGMGFGAQRWVATLQRQCEC 607
                 ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.02E-20154227IPR009057Homeodomain-like
PROSITE profilePS5007117.135167227IPR001356Homeobox domain
SMARTSM003892.8E-17168231IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-20168235IPR009057Homeodomain-like
CDDcd000861.95E-18169227No hitNo description
PfamPF000467.1E-18170225IPR001356Homeobox domain
PROSITE patternPS000270202225IPR017970Homeobox, conserved site
PROSITE profilePS5084843.25373610IPR002913START domain
SuperFamilySSF559616.73E-33375607No hitNo description
CDDcd088754.85E-122377606No hitNo description
SMARTSM002344.0E-51382607IPR002913START domain
PfamPF018522.9E-55383607IPR002913START domain
SuperFamilySSF559618.97E-24636861No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MSLGGFLDNC VASSVGGGDD DDGGGKVGDI SYINTTTNNN MPPGTITQSP LVGPTTTSSS  60
PSSFNKTFFS SPGLSLALQT GMEGQGEVKR VNEQNYEGNY NSNNDSSNIN INNGSGNNNI  120
INNDSSNNNN GGVGLRRSRE EHESRSGSDD LLLETASGDD QDIADLPPRK KRYHRHTPQQ  180
IQQLESVFKE CPHPDEKQRL ELSKRLCLET RQVKFWFQNR RTQMKTQLER HENSMLRQEN  240
DKLRGENMSI REAMRNPMCT NCGGPAMIGD ISMEEQHLRI ENARLKDELD RVCSLASKFL  300
GRPVSSLSTM SGSIPPHMPS SALELGVGTN GFSPLNTVSS TLPLAPDFGS GISNTLHALS  360
PTKSTANVAG IERSLERSMF LELALGAMDE LLKMAQTDEP VWLRNIDSGG REILNHDEYR  420
RSFNPCIGMK PNGFVSEASR ETGVVIINSL ALVETLMDVN RWTEMFPGMV ARASTTDVIS  480
SGMGGSRNGA LQLMHAELQV LSPLVPVRVV NFLRFCKQHA DGVWAVVDVS IDCIRETSGS  540
PTFANCRRLP SGCVVQDMPN GYSKVTWVEH AEYDDNSIHQ LYKPLIGAGM GFGAQRWVAT  600
LQRQCECLAI LMSSTVPSGD HTAITASGRR SMLKLAQRMT NNFCVGVCAS TVHQWNKLDM  660
GNIDEDVRVM TRKSVDDPGE PPGIVLSAAT SVWMPISPQR LFDFLRDERL RSEWDILSNG  720
GPMQEMAHIA KGQDQGNCVS LLRAGAVNPN QSSMLILQET CTDTSGSLVV YAPVDIPAMH  780
VVMNGGDSAY VALLPSGFSI VPDGSGSRGP NGQNLGSDRL GGSLLTVAFQ ILVNSLPTAK  840
LTVESVETVN NLISCTVQKI KASLHCEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671720.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0K9QLI30.0A0A0K9QLI3_SPIOL; Uncharacterized protein
STRINGXP_010671720.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]