PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42659.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 260aa    MW: 30703.4 Da    PI: 10.1056
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42659.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.96e-1716109190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 kfY+ YA  +GF+ r+ ++k+  ++g+  ++  vC++eg+  ++kk+      +e  +r+++ +r+gC+a++++  + +g+ +++ +++ HnHel+
  Dca42659.1  16 KFYKIYAFACGFTARRWSTKRW-DDGSLQSKLVVCNREGFYGSKKKRkikeesSEVVERRSKMHRIGCRARMRLYVK-NGVVRIDVFDEYHNHELV 109
                 6*************99988777.9999*************999998878777656666788999**********999.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1316109IPR004330FAR1 DNA binding domain
PfamPF105515.1E-12199254IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPFIGKEFHD VEVGIKFYKI YAFACGFTAR RWSTKRWDDG SLQSKLVVCN REGFYGSKKK  60
RKIKEESSEV VERRSKMHRI GCRARMRLYV KNGVVRIDVF DEYHNHELVS PENRQFQKMA  120
RHLTKYHKKL ILSNSRRDVK CFIHDRDGQL FVDHLVSLKE TRPGFYFDYD VDAKGCLRRV  180
IWADNYARKS YALFGDALAY DPTYSTNKYS MVFTPFTGVD NHKKSITFCG ALIAKEDYES  240
FVWVFTRFLI AMVIRLSRVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-28FAR1-related sequence 5