PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca427.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 363aa MW: 40596.6 Da PI: 5.8019

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca427.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.4	1.7e-09	141	199	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK ++ eLe+kv++L++e +aL +l+ + + l se+ Dca427.1 141 KRAKRILANRQSAARSKERKARYMIELEKKVQALQTEATALTAQLSLFERDTSGLSSEN 199 9********************************************99998888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-15	137	201	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	139	202	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-9	141	191	No hit	No description
Pfam	PF00170	3.7E-8	141	199	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.6E-8	141	212	No hit	No description
CDD	cd14703	1.35E-21	142	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MEGEDRRDHR DCVDLLPMYM MDMENMICGE INGGDHHRSN NNYCVNYVDF LDNNNDCFIA 60 NNGHGHRNRL RHCFSVDGFS GFSSSNDNNN NNNNDNNANN NNNKNVNNTN NNGSKIRKNN 120 GEAKKAMSPS KLAELWIADP KRAKRILANR QSAARSKERK ARYMIELEKK VQALQTEATA 180 LTAQLSLFER DTSGLSSENT ELRRQLESME QQAQLRDALN DALQQELDRL KVATGETTTA 240 TTDSFIIPCT NSQQTTHPFD FINVSCAPPL NTSISALHGP YHPTTTTADP NMLLYQQTMP 300 PPQMYNDIDN NGSQLGSHLP QFPVDSSSES PSTMTNQDQL SRLQGLDLSG RGSRLISSEN 360 MGF

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MEGEDRRDHR DCVDLLPMYM MDMENMICGE INGGDHHRSN NNYCVNYVDF LDNNNDCFIA  60
NNGHGHRNRL RHCFSVDGFS GFSSSNDNNN NNNNDNNANN NNNKNVNNTN NNGSKIRKNN  120
GEAKKAMSPS KLAELWIADP KRAKRILANR QSAARSKERK ARYMIELEKK VQALQTEATA  180
LTAQLSLFER DTSGLSSENT ELRRQLESME QQAQLRDALN DALQQELDRL KVATGETTTA  240
TTDSFIIPCT NSQQTTHPFD FINVSCAPPL NTSISALHGP YHPTTTTADP NMLLYQQTMP  300
PPQMYNDIDN NGSQLGSHLP QFPVDSSSES PSTMTNQDQL SRLQGLDLSG RGSRLISSEN  360
MGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670608.1	5e-76	PREDICTED: transcription factor RF2b
TrEMBL	A0A0K9RLX0	4e-68	A0A0K9RLX0_SPIOL; Uncharacterized protein
STRING	XP_010670608.1	2e-75	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-44	bZIP family protein