PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42706.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 159aa    MW: 18610.8 Da    PI: 8.5885
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42706.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.69.3e-0944136790
        FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle.....leHnHela 90 
                 A e GF ++k+++ ++ +++ e   + f+Cs++g++++  +  +k +++  +++++C+ +++  +++    +++   w++   +      +HnHel+
  Dca42706.1  44 AFENGFALVKATNGQKnRKQPELLASYFRCSRYGRSKSVYDP-DKPKKKPRTQKCDCDFRVRAVQNYhsidNKRvvlWNI---ViskgfGNHNHELT 136
                 7789**9999887655488999**************999888.6677777778899988887655544543332222443...24446699****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-543136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSDVDSVDSF EDFRGDDVDY NPLFVTKVCF KDRDEAFDWA NNVAFENGFA LVKATNGQKN  60
RKQPELLASY FRCSRYGRSK SVYDPDKPKK KPRTQKCDCD FRVRAVQNYH SIDNKRVVLW  120
NIVISKGFGN HNHELTKYKD GHRHYAGLDE EEKAYIKQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692KPKKKPR
28793PKKKPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-